Projects funded by the NCN

COGRIMEN - coarse-grained method for modeling of large biological systems in explicit environments

Call: OPUS 8 , Panel: ST4

Principal investigator: prof. Sławomir Filipek

Uniwersytet Warszawski, Wydział Chemii

An integrated approach to the prediction of the structures of proteins and protein complexes with the use of the coarse-...

Call: HARMONIA 5 , Panel: ST4

Principal investigator: prof. Józef Liwo

Uniwersytet Gdański, Wydział Chemii

Simulation of conformational changes related to the interdomain communication in the eukaryotic GlcN-6-P synthase by mea...

Call: PRELUDIUM 5 , Panel: NZ2

Principal investigator: Aleksandra Miszkiel

Politechnika Gdańska, Wydział Chemiczny

Correlated mean-field interactions propagated along polypeptide chain as a key to understanding the structure formation,...

Call: OPUS 26 , Panel: ST4

Principal investigator: prof. Józef Liwo

Uniwersytet Gdański, Wydział Chemii

Optimization of coarse-grained molecular dynamics simulations for tunnel exploration of large proteins with buried activ...

Call: PRELUDIUM 22 , Panel: NZ2

Principal investigator: Nishita Mandal

Uniwersytet im. Adama Mickiewicza w Poznaniu, Wydział Biologii

Multi-scale method for amyloid fibril assembly using protofilament structures predicted by coarse-grained docking simula...

Call: OPUS 22 , Panel: NZ2

Principal investigator: dr Michał Koliński

Instytut Medycyny Doświadczalnej i Klinicznej im. Mirosława Mossakowskiego Polskiej Akademii Nauk

Coarse-grained molecular dynamics of RNA thermometers at elevated temperatures

Call: PRELUDIUM 2 , Panel: NZ2

Principal investigator: Filip Leonarski

Uniwersytet Warszawski, Centrum Nowych Technologii Uniwersytetu Warszawskiego

Integrative methods for modeling protein-protein complexes and multimolecular assemblies

Call: SHENG 2 , Panel: NZ2

Principal investigator: dr hab. Sebastian Kmiecik

Uniwersytet Warszawski, Centrum Nauk Biologiczno-Chemicznych

Data-assisted modeling of the ensemble structure of intrinsically disordered proteins and their assemblies

Call: SHENG 2 , Panel: ST4

Principal investigator: prof. Józef Liwo

Uniwersytet Gdański, Wydział Chemii

Development of tools for the rational design of peptide therapeutics

Call: OPUS 20 , Panel: NZ2

Principal investigator: dr hab. Sebastian Kmiecik

Uniwersytet Warszawski, Centrum Nauk Biologiczno-Chemicznych

Coarse-grained modeling of carbohydrates

Call: OPUS 18 , Panel: ST4

Principal investigator: dr hab. Wojciech Płaziński

Instytut Katalizy i Fizykochemii Powierzchni im. Jerzego Habera Polskiej Akademii Nauk

Development of a new protein-protein docking method based on the flexible docking of short peptide fragments.

Call: OPUS 17 , Panel: NZ2

Principal investigator: dr Mateusz Kurciński

Uniwersytet Warszawski

Combining Rosetta method with deeply coarse grained SURPASS model into a novel multiscale algorithm for modeling protein...

Call: OPUS 15 , Panel: ST6

Principal investigator: dr hab. Dominik Gront

Uniwersytet Warszawski, Wydział Chemii

An integrated approach to modeling protein structure and dynamics based on the UNRES coarse-grained force field and bioi...

Call: HARMONIA 9 , Panel: ST4

Principal investigator: dr hab. Cezary Czaplewski

Uniwersytet Gdański, Wydział Chemii

A coarse-grained method for RNA 3D structure modeling, with emphasis on non-canonical base pairing.

Call: OPUS 12 , Panel: ST6

Principal investigator: dr Michał Boniecki

Międzynarodowy Instytut Biologii Molekularnej i Komórkowej

Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations with proteins

Call: PRELUDIUM 11 , Panel: ST4

Principal investigator: dr Agnieszka Lipska

Uniwersytet Gdański, Wydział Chemii

Self-aggregation of protein complexes: virus capsids and amyloids

Call: POLONEZ 1 , Panel: ST3

Principal investigator: dr Panagiotis Theodorakis

Instytut Fizyki Polskiej Akademii Nauk

Modeling 3D structures and dynamics of RNA complexes with metal ions, with particular emphasis on the formation of non-c...

Call: SONATA 9 , Panel: NZ1

Principal investigator: dr Dorota Niedziałek

Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

Global protein docking algorithms based on the UNRES coarse-grained model

Call: PRELUDIUM 9 , Panel: ST4

Principal investigator: dr Paweł Krupa

Uniwersytet Gdański, Wydział Chemii

X-ray diffraction stress investigation in generalized measurement grids - new research possibilities for materials with ...

Call: PRELUDIUM 9 , Panel: ST8

Principal investigator: Bogusz Kania

Instytut Metalurgii i Inżynierii Materiałowej im. Aleksandra Krupkowskiego PAN