Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

Delete all

Development of a new protein-protein docking method based on the flexible docking of short peptide fragments.

2019/33/B/NZ2/02100

Keywords:

molecular modeling proteins peptides flexible docking coarse-grained model

Descriptors:

  • NZ2_010:
  • NZ2_007:
  • NZ2_008:

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Warszawski

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Mateusz Kurciński 

Number of co-investigators in the project: 3

Call: OPUS 17 - announced on 2019-03-15

Amount awarded: 1 461 900 PLN

Project start date (Y-m-d): 2020-03-09

Project end date (Y-m-d): 2024-03-08

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (7)
  1. NCodR: A multi-class support vector machine classification to distinguish non-coding RNAs in Viridiplantae.
    Authors:
    Chandran Nithin, Sunandan Mukherjee, Jolly Basak and Ranjit Prasad Bahadur
    Academic press:
    Quantitative Plant Biology (rok: 2022, tom: 3, strony: E23), Wydawca: Cambridge University Press
    Status:
    Published
    DOI:
    10.1017/qpb.2022.18 - link to the publication
  2. Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations
    Authors:
    Kurcinski, M.; Kmiecik, S.; Zalewski, M.; Kolinski, A.
    Academic press:
    International journal of molecular sciences (rok: 2021, tom: 22(14), strony: 7341), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms22147341 - link to the publication
  3. MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes
    Authors:
    Aleksandra E Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
    Academic press:
    Nucleic Acid Research (rok: 2022, tom: 50 W1, strony: W474-482), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gkac307 - link to the publication
  4. MAPIYA contact map server for identification and visualization of molecular interactions in proteins and biological complexes
    Authors:
    Aleksandra E Badaczewska-Dawid, Chandran Nithin, Karol Wroblewski, Mateusz Kurcinski, Sebastian Kmiecik
    Academic press:
    Nucleic Acid Research (rok: 2022, tom: 50 W1, strony: W474-482), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gkac307 - link to the publication
  5. Protein–Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations
    Authors:
    Mateusz Kurcinski, Sebastian Kmiecik, Mateusz Zalewski and Andrzej Kolinski
    Academic press:
    International Journal of Molecular Sciences (rok: 2021, tom: 22(14), strony: 7341), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms22147341 - link to the publication
  6. NCodR: A multi-class support vector machine classification to distinguish non-coding RNAs in Viridiplantae.
    Authors:
    Chandran Nithin, Sunandan Mukherjee, Jolly Basak and Ranjit Prasad Bahadur
    Academic press:
    Quantitative Plant Biology (rok: 2022, tom: 3, strony: E23), Wydawca: Cambridge University Press
    Status:
    Published
    DOI:
    10.1017/qpb.2022.18 - link to the publication
  7. Structure prediction of linear and cyclic peptides using CABS-flex
    Authors:
    Aleksandra Badaczewska-Dawid, Karol Wróblewski, Mateusz Kurcinski, Sebastian Kmiecik
    Academic press:
    Briefings in Bioinformatics (rok: 2024, tom: vol. 25, issue 2, strony: bbae003), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bib/bbae003 - link to the publication

O Narodowym Centrum Nauki

Finansowanie nauki

Współpraca zagraniczna

Centrum prasowe

Deklaracja dostępności
Przetwarzanie danych osobowych
Polityka cookies

Partnerzy