Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Modeling 3D structures and dynamics of RNA complexes with metal ions, with particular emphasis on the formation of non-canonical base pairs: extension of he SimRNA coarse-grained model towards hish-resolution.

2015/17/D/NZ1/01560

Keywords:

bioinformatics RNA structural analysis G-quadruplexes

Descriptors:

  • NZ1_4: Structural biology
  • ST4_4: Theoretical and computational chemistry
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

NZ1 - Molecular biology, structural biology, biotechnology: molecular biology, structural biology, biotechnology

Host institution :

Instytut Biochemii i Biofizyki Polskiej Akademii Nauk

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Dorota Niedziałek 

Number of co-investigators in the project: 2

Call: SONATA 9 - announced on 2015-03-16

Amount awarded: 465 400 PLN

Project start date (Y-m-d): 2016-02-18

Project end date (Y-m-d): 2019-08-17

Project duration:: 42 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Monitor (1 000 PLN)
  2. Macierz dyskowa (30 000 PLN)

Information in the final report

  • Publication in academic press/journals (2)
  1. Structural bases of peptidoglycan recognition by lysostaphin SH3b domain
    Authors:
    Paweł Mitkowski, Elżbieta Jagielska, Elżbieta Nowak, Janusz M. Bujnicki, Filip Stefaniak, Dorota Niedziałek, Matthias Bochtler & Izabela Sabała
    Academic press:
    Scientific Reports (rok: 2019, tom: 9, strony: 5965), Wydawca: Nature Publishing Group
    Status:
    Published
    DOI:
    brak - link to the publication
  2. Tracking Topological and Electronic Effects on the Folding and Stability of Guanine-Deficient RNA G-Quadruplexes, Engineered with a New Computational Tool for de novo Quadruplex Folding
    Authors:
    Yavuz Burak Göç, Jakub Poziemski, Weronika Smolińska, Dominik Suwała, Grzegorz Wieczorek, Dorota Niedzialek *
    Academic press:
    International Journal of Molecular Sciences (rok: 2022, ), Wydawca: MDPI
    Status:
    Submitted
    DOI:
    brak - link to the publication

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