Projects funded by the NCN

COGRIMEN - coarse-grained method for modeling of large biological systems in explicit environments

Call: OPUS 8 , Panel: ST4

Principal investigator: prof. Sławomir Hubert Filipek

Uniwersytet Warszawski, Wydział Chemii

An integrated approach to the prediction of the structures of proteins and protein complexes with the use of the coarse-...

Call: HARMONIA 5 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions

Call: MAESTRO 3 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

Identification of proteolytic cleavage sites in peptide substrates using coarse-grained docking and machine learning met...

Call: OPUS 29 , Panel: NZ1

Principal investigator: dr hab. Michał Koliński

Instytut Medycyny Doświadczalnej i Klinicznej im. Mirosława Mossakowskiego PAN

COGRIMEN 2.0 - a toolkit for coarse-grained and all-atom modeling of biomolecules in implicit environments

Call: OPUS 29 , Panel: ST4

Principal investigator: prof. Sławomir Hubert Filipek

Uniwersytet Warszawski

Incorporating Temperature Dependence of Side-Chain Interaction Potential into UNRES Force Field

Call: PRELUDIUM 24 , Panel: ST4

Principal investigator: Mateusz Leśniewski

Uniwersytet Gdański

Insight into the function of post-translational modifications of proteins via large-size scale and long-scale molecular ...

Call: SONATA 19 , Panel: ST4

Principal investigator: dr Agnieszka Gabriela Lipska

Politechnika Gdańska

Correlated mean-field interactions propagated along polypeptide chain as a key to understanding the structure formation,...

Call: OPUS 26 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

Multi-scale method for amyloid fibril assembly using protofilament structures predicted by coarse-grained docking simula...

Call: OPUS 22 , Panel: NZ2

Principal investigator: dr Michał Koliński

Instytut Medycyny Doświadczalnej i Klinicznej im. Mirosława Mossakowskiego PAN

Integrative methods for modeling protein-protein complexes and multimolecular assemblies

Call: SHENG 2 , Panel: NZ2

Principal investigator: dr hab. Sebastian Kmiecik

Uniwersytet Warszawski, Centrum Nauk Biologiczno-Chemicznych

Data-assisted modeling of the ensemble structure of intrinsically disordered proteins and their assemblies

Call: SHENG 2 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

Computational study of protein folding and dimerization on the ribosome

Call: OPUS 18 , Panel: ST4

Principal investigator: prof. Mai Suan Li

Instytut Fizyki PAN

Coarse-grained modeling of carbohydrates

Call: OPUS 18 , Panel: ST4

Principal investigator: dr hab. Wojciech Sylwester Płaziński

Instytut Katalizy i Fizykochemii Powierzchni im. Jerzego Habera PAN

Development of a new protein-protein docking method based on the flexible docking of short peptide fragments.

Call: OPUS 17 , Panel: NZ2

Principal investigator: dr Mateusz Kurciński

Uniwersytet Warszawski

Combining Rosetta method with deeply coarse grained SURPASS model into a novel multiscale algorithm for modeling protein...

Call: OPUS 15 , Panel: ST6

Principal investigator: dr hab. Dominik Gront

Uniwersytet Warszawski, Wydział Chemii

Mapping NARES-2P coarse-grained model of nucleic acids to all-atom representation

Call: PRELUDIUM 14 , Panel: ST4

Principal investigator: Łukasz Golon

Uniwersytet Gdański, Wydział Chemii

An integrated approach to modeling protein structure and dynamics based on the UNRES coarse-grained force field and bioi...

Call: HARMONIA 9 , Panel: ST4

Principal investigator: dr hab. Cezary Ryszard Czaplewski

Uniwersytet Gdański, Wydział Chemii

Increasing global and local accuracy of the coarse-grained UNRES model of proteins and its extensions to simulating very...

Call: OPUS 13 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

A coarse-grained method for RNA 3D structure modeling, with emphasis on non-canonical base pairing.

Call: OPUS 12 , Panel: ST6

Principal investigator: dr Michał Boniecki

Międzynarodowy Instytut Biologii Molekularnej i Komórkowej

Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations with proteins

Call: PRELUDIUM 11 , Panel: ST4

Principal investigator: dr Agnieszka Gabriela Lipska

Uniwersytet Gdański, Wydział Chemii

Global protein docking algorithms based on the UNRES coarse-grained model

Call: PRELUDIUM 9 , Panel: ST4

Principal investigator: dr Paweł Krupa

Uniwersytet Gdański, Wydział Chemii

X-ray diffraction stress investigation in generalized measurement grids - new research possibilities for materials with ...

Call: PRELUDIUM 9 , Panel: ST8

Principal investigator: Bogusz Kania

Instytut Metalurgii i Inżynierii Materiałowej im. Aleksandra Krupkowskiego PAN

A coarse-grained model of protein - nanoparticles interactions for simulating the transport of drug molecules to their t...

Call: PRELUDIUM 9 , Panel: ST4

Principal investigator: dr Magdalena Anna Mozolewska

Uniwersytet Gdański, Wydział Chemii

DNA repair mechanisms: from coarse-grained to atomistic description

Call: SONATA 9 , Panel: ST4

Principal investigator: dr Adam Kazimierz Sieradzan

Uniwersytet Gdański, Wydział Chemii