Projects funded by the NCN

COGRIMEN 2.0 - a toolkit for coarse-grained and all-atom modeling of biomolecules in implicit environments

Call: OPUS 29 , Panel: ST4

Principal investigator: prof. Sławomir Hubert Filipek

Uniwersytet Warszawski

Incorporating Temperature Dependence of Side-Chain Interaction Potential into UNRES Force Field

Call: PRELUDIUM 24 , Panel: ST4

Principal investigator: Mateusz Leśniewski

Uniwersytet Gdański

Insight into the function of post-translational modifications of proteins via large-size scale and long-scale molecular ...

Call: SONATA 19 , Panel: ST4

Principal investigator: dr Agnieszka Gabriela Lipska

Politechnika Gdańska

Correlated mean-field interactions propagated along polypeptide chain as a key to understanding the structure formation,...

Call: OPUS 26 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

Investigation of the impact of pulsed electric field on metabolism of selected fruits and vegetables

Call: PRELUDIUM 21 , Panel: NZ9

Principal investigator: Aleksandra Skarżyńska

Szkoła Główna Gospodarstwa Wiejskiego w Warszawie, Instytut Nauk o Żywności

Spectroscopic and microscopic techniques in nano-probing, modeling and recognition of interactions between erythrocytes ...

Call: SONATA BIS 10 , Panel: ST4

Principal investigator: dr hab. Katarzyna Maria Marzec

Akademia Górniczo-Hutnicza im. Stanisława Staszica w Krakowie, Wydział Fizyki i Informatyki Stosowanej

Computational study of protein folding and dimerization on the ribosome

Call: OPUS 18 , Panel: ST4

Principal investigator: prof. Mai Suan Li

Instytut Fizyki PAN

Coarse-grained modeling of carbohydrates

Call: OPUS 18 , Panel: ST4

Principal investigator: dr hab. Wojciech Sylwester Płaziński

Instytut Katalizy i Fizykochemii Powierzchni im. Jerzego Habera PAN

Mapping NARES-2P coarse-grained model of nucleic acids to all-atom representation

Call: PRELUDIUM 14 , Panel: ST4

Principal investigator: Łukasz Golon

Uniwersytet Gdański, Wydział Chemii

Structures of oligomers of amyloid beta peptides: Multiscale molecular simulations.

Call: PRELUDIUM 14 , Panel: NZ1

Principal investigator: Dinh Quoc Huy Pham

Instytut Fizyki PAN

Coarse-grain modeling of biochemical processes with proteins taking into account water and lipid molecules.

Call: OPUS 14 , Panel: ST4

Principal investigator: dr Adam Sieradzan

Uniwersytet Gdański, Wydział Chemii

An integrated approach to modeling protein structure and dynamics based on the UNRES coarse-grained force field and bioi...

Call: HARMONIA 9 , Panel: ST4

Principal investigator: dr hab. Cezary Ryszard Czaplewski

Uniwersytet Gdański, Wydział Chemii

Geometric and analytic properties of ordinary differential equations

Call: OPUS 13 , Panel: ST1

Principal investigator: prof. Henryk Żołądek

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

Studies of quantum gauge field theories in their non-perturbative regime

Call: OPUS 11 , Panel: ST2

Principal investigator: prof. Jacek Wosiek

Uniwersytet Jagielloński, Wydział Fizyki, Astronomii i Informatyki Stosowanej

Computational approaches to study protein-glycosaminoglycan interactions

Call: POLONEZ 2 , Panel: ST4

Principal investigator: dr Sergey Samsonov

Uniwersytet Gdański, Wydział Chemii

Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations with proteins

Call: PRELUDIUM 11 , Panel: ST4

Principal investigator: dr Agnieszka Gabriela Lipska

Uniwersytet Gdański, Wydział Chemii

Interactions of amyloid beta peptides with metal ions and lipid membranes: Insights from lattice and all-atom simulation...

Call: OPUS 10 , Panel: ST4

Principal investigator: prof. Mai Suan Li

Instytut Fizyki PAN

Extending the aspherical pseudoatom databank versatility with special attention on accurate description of electrostatic

Call: PRELUDIUM 10 , Panel: ST4

Principal investigator: Sławomir Antoni Bojarowski

Uniwersytet Warszawski, Wydział Chemii

Molecular mechanics force field for structure, dynamics and conformation of carbohydrates involving furanoses

Call: SONATA BIS 5 , Panel: ST4

Principal investigator: dr hab. Wojciech Płaziński

Instytut Katalizy i Fizykochemii Powierzchni im. Jerzego Habera PAN

Refinement of the OPLS-AA force field parameters for selected phospholipids on the basis of quantum-mechanical calculati...

Call: SONATA 9 , Panel: ST4

Principal investigator: dr Anna Wójcik-Augustyn

Uniwersytet Jagielloński, Wydział Biochemii, Biofizyki i Biotechnologii

A coarse-grained model of protein - nanoparticles interactions for simulating the transport of drug molecules to their t...

Call: PRELUDIUM 9 , Panel: ST4

Principal investigator: dr Magdalena Anna Mozolewska

Uniwersytet Gdański, Wydział Chemii

DNA repair mechanisms: from coarse-grained to atomistic description

Call: SONATA 9 , Panel: ST4

Principal investigator: dr Adam Kazimierz Sieradzan

Uniwersytet Gdański, Wydział Chemii

COGRIMEN - coarse-grained method for modeling of large biological systems in explicit environments

Call: OPUS 8 , Panel: ST4

Principal investigator: prof. Sławomir Hubert Filipek

Uniwersytet Warszawski, Wydział Chemii

Structural changes of the alveolar membrane induced by lipid peroxidation and atmospheric pollutants: theoretical and ex...

Call: OPUS 7 , Panel: ST4

Principal investigator: prof. Jacek Grzegorz Korchowiec

Uniwersytet Jagielloński, Wydział Chemii

An integrated approach to the prediction of the structures of proteins and protein complexes with the use of the coarse-...

Call: HARMONIA 5 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

Kerr response: experiment and molecular dynamics simulations on GPU with polarizable force field and explicit laser puls...

Call: PRELUDIUM 5 , Panel: ST4

Principal investigator: dr Kamil Dawid Polok

Uniwersytet Warszawski, Wydział Chemii

A unified coarse-grained model of biological macromolecules based on mean-field multipole-multipole interactions

Call: MAESTRO 3 , Panel: ST4

Principal investigator: prof. Józef Adam Liwo

Uniwersytet Gdański, Wydział Chemii

Differential equations, geometry and physics

Call: OPUS 3 , Panel: ST1

Principal investigator: prof. Henryk Żołądek

Uniwersytet Warszawski

Harmonic functions and diffusions on treebolic spaces, trees and their boundaries.

Call: OPUS 3 , Panel: ST1

Principal investigator: prof. Alexander Bendikov

Uniwersytet Wrocławski, Wydział Matematyki i Informatyki

Coarse-grained molecular dynamics of RNA thermometers at elevated temperatures

Call: PRELUDIUM 2 , Panel: NZ2

Principal investigator: Filip Karol Leonarski

Uniwersytet Warszawski, Centrum Nowych Technologii Uniwersytetu Warszawskiego

Enhancing resolution and predictive power of the UNRES force field for protein folding simulations by revision of the po...

Call: PRELUDIUM 1 , Panel: ST4

Principal investigator: dr Adam Kazimierz Sieradzan

Uniwersytet Gdański, Wydział Chemii

Charge Sensitivity Approach to Polarizable Force Fields

Call: OPUS 1 , Panel: ST4

Principal investigator: dr hab. Jacek Grzegorz Korchowiec

Uniwersytet Jagielloński, Wydział Chemii

Mathematics of quantum fields and quantization

Call: OPUS 1 , Panel: ST1

Principal investigator: prof. Jan Dereziński

Uniwersytet Warszawski, Wydział Fizyki

Novel class of chiral ionic liquids with menthyl substituent - synthesis, characterisation and computer modelling of sur...

Call: OPUS 1 , Panel: ST5

Principal investigator: dr Borys Szefczyk

Politechnika Wrocławska, Wydział Chemiczny