Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Analysis of changes in transcriptome profile of blood and skeletal muscle in Arabian horses during training regime, using by the method based on Next Generation Sequencing - RNA-seq

2014/15/D/NZ9/05256

Keywords:

Arabian horses RNA-seq transcriptome skeletal muscle blood selectable marker

Descriptors:

  • NZ2_2: Genomics, transcriptomics, epigenomics
  • NZ9_2: Animal production

Panel:

NZ9 - Fundamentals of applied life sciences and biotechnology: agricultural, forestry, horticulture, animal production and fishery, food and nutrition sciences, industrial biosciences, environmental biotechnology and remediation

Host institution :

Instytut Zootechniki - Państwowy Instytut Badawczy

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr hab. Katarzyna Ropka-Molik 

Number of co-investigators in the project: 5

Call: SONATA 8 - announced on 2014-09-15

Amount awarded: 694 600 PLN

Project start date (Y-m-d): 2015-07-24

Project end date (Y-m-d): 2019-07-23

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. aparat do real-time PCR (QuantStudio™ 7 Flex) (250 000 PLN)

Information in the final report

  • Publication in academic press/journals (13)
  • Articles in post-conference publications (15)
  1. Exercise-induced modification of the skeletal muscle transcriptome in Arabian horses
    Authors:
    Ropka-Molik K, Stefaniuk-Szmukier M, Z Ukowski K, Piórkowska K, Bugno-Poniewierska M
    Academic press:
    Physiological Genomics (rok: 2017, tom: 49(6), strony: 318-326), Wydawca: American Physiological Society
    Status:
    Published
    DOI:
    10.1152/physiolgenomics.00130.2016 - link to the publication
  2. The blood and muscle expression pattern of equine TCAP gene during the race track training of Arabian horses
    Authors:
    Stefaniuk-Szmukier M., Szmatoła T., Łątka J., Długosz B., Ropka-Molik K.,
    Academic press:
    Animals (rok: 2019, tom: 9, strony: 574), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ani9080574 - link to the publication
  3. The use of the SLC16A1 gene as a potential marker to predict race performance in Arabian horses
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Szmatoła T., Piórkowska K., Bugno-Poniewierska M.,
    Academic press:
    BMC Genectics (rok: 2019, tom: 0,884027777777778, strony: 45300), Wydawca: BioMed Central Ltd , Springer Nature
    Status:
    Published
    DOI:
    10.1186/s12863-019-0774-4 - link to the publication
  4. Variation in the SLC16A1 and the ACOX1 genes is associated with gallop racing performance in Arabian horses
    Authors:
    Fontane M., Todd E., Drabbe A., Ropka-Molik K., Stefaniuk-Szmukier M., Myćka G., Velie B.D.,
    Academic press:
    Journal of Equine Veterinary Science (rok: 2020, tom: 93, strony: 45295), Wydawca: ScienceDirect
    Status:
    Published
    DOI:
    10.1016/j.jevs.2020.103202 - link to the publication
  5. Variability of ACOX1 gene polymorphisms across different horse breeds in regard to selection pressure
    Authors:
    Myćka G., Musiał A.D., Stefaniuk-Szmukier M., Piórkowska K., Ropka-Molik K.,
    Academic press:
    Animals (rok: 2020, tom: animals-870235, strony: ), Wydawca: MDPI
    Status:
    Submitted
    DOI:
    brak - link to the publication
  6. The Genetics of Racing Performance in Arabian Horses
    Authors:
    K. Ropka-Molik, M. Stefaniuk-Szmukier, A. D. Musiał, B. D. Velie
    Academic press:
    International Journal of Genomics (rok: 2019, tom: ID 9013239, strony: 45299), Wydawca: Hindawi
    Status:
    Published
    DOI:
    10.1155/2019/9013239 - link to the publication
  7. Sequence analysis and expression profiling of the equine ACTN3 gene during exercise in Arabian horses
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Musiał A. D., Piórkowska K., Szmatoła T.,
    Academic press:
    Gene (rok: 2019, tom: 685, strony: 149-155), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.079 - link to the publication
  8. Transcriptome profiling of Arabian horse blood during training regimens
    Authors:
    Ropka-Molik K, Stefaniuk-Szmukier M, Żukowski K, Piórkowska K, Gurgul A, Bugno-Poniewierska M.
    Academic press:
    BMC Genetics (rok: 2017, tom: 18(1), strony: 31), Wydawca: BioMedCentral
    Status:
    Published
    DOI:
    10.1186/s12863-017-0499-1 - link to the publication
  9. Transcriptomic hallmarks of bone remodelling revealed by RNA-Seq profiling in blood of Arabian horses during racing training regime
    Authors:
    Stefaniuk-Szmukier M., Ropka-Molik K., Piórkowska K., Żukiowski K., Bugno-Poniewierska M.,
    Academic press:
    Gene (rok: 2018, tom: 676, strony: 256-262), Wydawca: ElsevierB.V.
    Status:
    Published
    DOI:
    10.1016/j.gene.2018.07.040. - link to the publication
  10. Analysis of polymorphisms in the equine MSTN gene in Polish populations of horse breeds
    Authors:
    Stefaniuk M., Ropka-Molik K., Piórkowska K., Kulisa M., Podstawski Z.
    Academic press:
    Livestock Science (rok: 2016, tom: 187, strony: 151-157), Wydawca: ElsevierB.V.
    Status:
    Published
    DOI:
    10.1016/j.livsci.2016.03.012 - link to the publication
  11. Molecular characterization of the apoptosis-related SH3RF1 and SH3RF2 genes and their association with exercise performance in Arabian horses
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Piórkowska K., Szmatoła T., Bugno-Poniewierska M.,
    Academic press:
    BMC Veterinary Research (rok: 2018, tom: 14, strony: 237), Wydawca: BioMedCentral
    Status:
    Published
    DOI:
    10.1186/s12917-018-1567-0 - link to the publication
  12. The expression profile of genes involved in osteoclastogenesis detected in whole blood of Arabian horses during 3 years of competing at race track
    Authors:
    Stefaniuk-Szmukier M., Ropka-Molik K., Piórkowska K., Bugno-Poniewierska M.
    Academic press:
    Research in Veterinary Science (rok: 2019, tom: 123, strony: 59-64), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.rvsc.2018.12.013 - link to the publication
  13. ACTN3 genotype distribution across horses representing different utility types and breeds
    Authors:
    Musial AD, Ropka-Molik K., Piórkowska K., Jaworska J., Stefaniuk-Szmukier M.,
    Academic press:
    Molecular Biology Reports (rok: 2019, tom: 46, strony: 5795–5803), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s11033-019-05013-0 - link to the publication
  1. Genome wide recognition and analysis of long non-coding RNAs in Arabian horses transcriptome
    Authors:
    Żukowski, K., Stefaniuk-Szmukier, M., Ropka-Molik, K., Bugno-Poniewierska, M
    Conference:
    69th Annual Meeting of the European Federation of Animal Science (EAAP) (rok: 2018, ), Wydawca: Wageningen Academic Publishers
    Data:
    konferencja 27-31 sierpnia
    Status:
    Published
  2. Regulation of Transposable Elements by exercise induced stres in racing Arabian horses during race track performance reveal by RNA-seq.
    Authors:
    Stefaniuk-Szmukier M., Ropka-Molik K., Żukowski K., Piórkowska K., Bugno-Poniewierska M
    Conference:
    Dorothy Russell Havemeyer 12th International Horse Genome Workshop (rok: 2018, ), Wydawca: Published for the Stichting International Foundation for Animal Genetics
    Data:
    konferencja 12-15 wrzesień
    Status:
    Published
  3. Training-inducted modification of apoptosis related genes in Arabian horses during flat-racing schedule
    Authors:
    Ropka-Molik K., Piórkowska K., Musial AD, Stefaniuk-Szmukier M.,
    Conference:
    37th International Society for Animal Genetics Conference (rok: 2019, ), Wydawca: International Society for Animal Genetics
    Data:
    konferencja 7-12.07
    Status:
    Published
  4. Influence of exercise on genes expression associated with lipid metabolism in Arabian horse blood
    Authors:
    Stefaniuk-Szmukier M., Ropka-Molik K., Piórkowska K., Żukowski K., Bugno-Poniewierska M.
    Conference:
    V Polski Kongres Genetyki (rok: 2016, ), Wydawca: Materiały konferencyjne Polskiego Towarzystwa Genetycznego
    Data:
    konferencja 19-22.09
    Status:
    Published
  5. Preliminary study of training induced changes in long transposable elements (LTEs) expression in blood of Arabian horses
    Authors:
    Stefaniuk-Szmukier M, Ropka-Molik K, Żukowski K, Piórkowska K, Monika Bugno-Poniewierska M,
    Conference:
    6th Central European Congress of Life Science Eurobiotech (rok: 2017, ), Wydawca: Folia Biologica
    Data:
    konferencja 11-14.09.2017
    Status:
    Published
  6. The expression profile of VAV3 gene in whole blood of Arabian horses during competing at race track
    Authors:
    Stefaniuk-Szmukier, M.,, Ropka-Molik, K.,, Piórkowska, K., Bugno-Poniewierska, M.
    Conference:
    69th Annual Meeting of the European Federation of Animal Science (EAAP) (rok: 2018, ), Wydawca: Wageningen Academic Publishers
    Data:
    konferencja 27-31 Sierpnia
    Status:
    Published
  7. Transcriptome profiling and comparison of whole blood and gluteus medius muscle of Arabian horses during 24 weeks race training
    Authors:
    Stefaniuk-Szmukier M., Ropka-Molik K., Żukowski K., Piórkowska K., Bugno-Poniewierska M,
    Conference:
    36 th International Society for Animal Genetics: ISAG (rok: 2017, ), Wydawca: International Society for Animal Genetics
    Data:
    konferencja 16-21.07.2017
    Status:
    Published
  8. Exercise regulation of genes belonging to FoxO signaling pathway in Arabian horse blood tissue
    Authors:
    Ropka-Molik K., Szmukier-Stefaniuk M., Piórkowska K., Żukowski K.,
    Conference:
    V Polski Kongres Genetyki (rok: 2016, ), Wydawca: Materiały konferencyjne Polskiego Towarzystwa Genetycznego
    Data:
    konferencja 19-22.09
    Status:
    Published
  9. The expression pattern of ACTN3 gene during training regimen in Arabian horses
    Authors:
    Ropka-Molik K., Musiał A.D., Stefaniuk-Szmukier M., Piórkowska K., Szmatoła T., Bugno-Poniewierska M.,
    Conference:
    1st Animal Genetics and Genomics conference (rok: 2018, ), Wydawca: University of Warmia and Mazury in Olsztyn, Zakład Poligraficzny , 10-957 Olsztyn, Heweliusza st.3
    Data:
    konferencja 2-4 Lipca
    Status:
    Published
  10. Exercise-related modification of the PLIN2 and FASN genes expression in Arabian horses skeletal muscle
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Żukowski K., Piórkowska K., Bugno-Poniewierska M.,
    Conference:
    6th Central European Congress of Life Science Eurobiotech (rok: 2017, ), Wydawca: Folia Biologica
    Data:
    konferencja 11-14.09.2017
    Status:
    Published
  11. Identification of polymorphisms within ACTN3 locus in Equus caballus
    Authors:
    Ropka-Molik, K., Musiał, A.D., Stefaniuk-Szmukier, M., Szmatoła, T., Bugno-Poniewierska, M.
    Conference:
    69th Annual Meeting of the European Federation of Animal Science (EAAP) (rok: 2018, ), Wydawca: Wageningen Academic Publishers
    Data:
    konferencja 27-31 Sierpnia
    Status:
    Published
  12. Major and candidate genes as a genetic markers in horses' selection
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Piórkowska K., Bugno-Poniewierska M.
    Conference:
    1st Animal Genetics and Genomics conference (rok: 2018, ), Wydawca: University of Warmia and Mazury in Olsztyn, Zakład Poligraficzny , 10-957 Olsztyn, Heweliusza st.3
    Data:
    konferencja 2-4 Lipiec
    Status:
    Published
  13. Potencjał wyścigowy koni arabskich a markery genetyczne
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Szmatoła T., Bugno-Poniewierska M.
    Conference:
    Konferencja "Badania naukowe w praktyce hodowlanej koni – nowoczesne narzędzia dla hodowców" (rok: 2017, ), Wydawca: Instytut Zootechniki Państwowy Instytut Badawczy
    Data:
    konferencja 12.12.2017
    Status:
    Published
  14. The most over-represented molecular pathways regulated during training in Arabian horse muscle tissue
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Żukowski K., Piórkowska K.
    Conference:
    36 th International Society for Animal Genetics: ISAG (rok: 2017, ), Wydawca: International Society for Animal Genetics
    Data:
    konferencja 16-21.07.2017
    Status:
    Published
  15. Transcriptome profiling of Arabian horses blood tissue during training regime using Next Generation Sequencing method
    Authors:
    Ropka-Molik K., Stefaniuk-Szmukier M., Żukowski K., Piórkowska K., Gurgul A.,
    Conference:
    35th International Society for Animal Genetics Conference; Salt Lake City, USA (rok: 2016, ), Wydawca: Journal of Animal Science
    Data:
    konferencja 23-27.07
    Status:
    Published
    DOI:
    link to the publication

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