Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Elucidation of the mechanisms that induce copy number polymorphism of large genome fragments and of the relations between this phenomenon and metabolic gene cluster formation and evolution in plants

2014/13/B/NZ2/03837

Keywords:

CNV copy number variation co-expression metabolic gene cluster

Descriptors:

  • NZ2_2: Genomics, transcriptomics, epigenomics
  • NZ8_9: Population genetics
  • NZ2_7: Bioinformatics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Instytut Chemii Bioorganicznej PAN

woj. wielkopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Marek Figlerowicz 

Number of co-investigators in the project: 6

Call: OPUS 7 - announced on 2014-03-17

Amount awarded: 911 900 PLN

Project start date (Y-m-d): 2015-02-26

Project end date (Y-m-d): 2019-07-25

Project duration:: 53 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Komputer stacjonarny z monitorem LCD (11 000 PLN)
  2. Oprogramowanie GeneMarker do analizy wyników MLPA.
  3. Monitor (1 382 PLN)

Information in the final report

  • Publication in academic press/journals (4)
  1. Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location
    Authors:
    Agnieszka Zmienko, Anna Samelak-Czajka, Piotr Kozlowski, Maja Szymanska, Marek Figlerowicz
    Academic press:
    BMC Genomics (rok: 2016, tom: 17, strony: 893), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s12864-016-3221-1 - link to the publication
  2. AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis thaliana Genome
    Authors:
    Agnieszka Żmieńko, Małgorzata Marszałek-Zeńczak, Paweł Wojciechowski, Anna Samelak-Czajka, Magdalena Łuczak, Piotr Kozłowski, Wojciech M. Karłowski, Marek Figlerowicz
    Academic press:
    Plant Cell (rok: 2020, tom: 32, strony: 45314), Wydawca: AMER SOC PLANT BIOLOGISTS
    Status:
    Published
    DOI:
    10.1105/tpc.19.00640 - link to the publication
  3. Analysis of Arabidopsis non-reference accessions reveals high diversity of metabolic gene clusters and discovers new candidate cluster members
    Authors:
    Malgorzata Marszalek-Zenczak, Anastasiia Satyr, Pawel Wojciechowski, Michal Zenczak, Paula Sobieszczanska, Krzysztof Brzezinski, Tetiana Iefimenko, Marek Figlerowicz, Agnieszka Zmienko
    Academic press:
    Frontiers in Plant Science (rok: 2023, tom: 14, strony: nie dotyczy), Wydawca: Frontiers Media SA
    Status:
    Published
    DOI:
    10.3389/fpls.2023.1104303 - link to the publication
  4. MLPA-based Analysis of Copy Number Variation in Plant Populations
    Authors:
    Anna Samelak-Czajka, Malgorzata Marszalek-Zenczak, Malgorzata Marcinkowska-Swojak, Piotr Kozlowski, Marek Figlerowicz, Agnieszka Zmienko
    Academic press:
    Frontiers in Plant Science (rok: 2017, tom: 8, strony: nie dotyczy), Wydawca: Frontiers
    Status:
    Published
    DOI:
    10.3389/fpls.2017.00222 - link to the publication

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