Elucidation of the mechanisms that induce copy number polymorphism of large genome fragments and of the relations between this phenomenon and metabolic gene cluster formation and evolution in plants
2014/13/B/NZ2/03837
Keywords
Descriptors
- NZ2_2: Genomika, transkryptomika i epigenomika
- NZ8_9: Genetyka populacyjna
- NZ2_7: Bioinformatyka
Panel
NZ2 – Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology
Host institution
Instytut Chemii Bioorganicznej PAN
Voivodeship: wielkopolskie
Principal investigator (from the host institution)
prof. Marek Marian Figlerowicz
Number of co-investigators in the project: 6
Call
OPUS 7 – announced on 2014-03-17
- Amount awarded
- 911 900 PLN
- Project start date
- 2015-02-26
- Project end date
- 2019-07-25
- Project duration
- 53 months (the same as in the proposal)
- Project status
- Project settled
Equipment purchased [PL]
- Komputer stacjonarny z monitorem LCD. Cost: 11 000 PLN
- Monitor. Cost: 1 382 PLN
- Oprogramowanie GeneMarker do analizy wyników MLPA.
Information in the final report
Publication in academic press/journals (4)
-
AthCNV: A Map of DNA Copy Number Variations in the Arabidopsis thaliana Genome
- Authors:
- Agnieszka Żmieńko, Małgorzata Marszałek-Zeńczak, Paweł Wojciechowski, Anna Samelak-Czajka, Magdalena Łuczak, Piotr Kozłowski, Wojciech M. Karłowski, Marek Figlerowicz
- Academic press:
- Plant Cell (year: 2020, volume: 32, pages: 46045), Publisher: AMER SOC PLANT BIOLOGISTS
- Status:
- Published
- DOI:
- 10.1105/tpc.19.00640 – link to the publication
-
Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location
- Authors:
- Agnieszka Zmienko, Anna Samelak-Czajka, Piotr Kozlowski, Maja Szymanska, Marek Figlerowicz
- Academic press:
- BMC Genomics (year: 2016, volume: 17, pages: 893), Publisher: BioMed Central
- Status:
- Published
- DOI:
- 10.1186/s12864-016-3221-1 – link to the publication
-
Analysis of Arabidopsis non-reference accessions reveals high diversity of metabolic gene clusters and discovers new candidate cluster members
- Authors:
- Malgorzata Marszalek-Zenczak, Anastasiia Satyr, Pawel Wojciechowski, Michal Zenczak, Paula Sobieszczanska, Krzysztof Brzezinski, Tetiana Iefimenko, Marek Figlerowicz, Agnieszka Zmienko
- Academic press:
- Frontiers in Plant Science (year: 2023, volume: 14, pages: nie dotyczy), Publisher: Frontiers Media SA
- Status:
- Published
- DOI:
- 10.3389/fpls.2023.1104303 – link to the publication
-
MLPA-based Analysis of Copy Number Variation in Plant Populations
- Authors:
- Anna Samelak-Czajka, Malgorzata Marszalek-Zenczak, Malgorzata Marcinkowska-Swojak, Piotr Kozlowski, Marek Figlerowicz, Agnieszka Zmienko
- Academic press:
- Frontiers in Plant Science (year: 2017, volume: 8, pages: nie dotyczy), Publisher: Frontiers
- Status:
- Published
- DOI:
- 10.3389/fpls.2017.00222 – link to the publication