Projects funded by the NCN
Algorithms for the multiple sequence alignment problem and its variants
2012/05/N/ST6/03158
Keywords:
multiple sequence alignment parallel algorithms GPGPU
Descriptors:
- ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
- ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory
Panel:
ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution :
Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki
woj. śląskie
Principal investigator (from the host institution):
Number of co-investigators in the project: 2
Call: PRELUDIUM 3 - announced on 2012-03-15
Amount awarded: 80 520 PLN
Project start date (Y-m-d): 2013-03-25
Project end date (Y-m-d): 2016-09-24
Project duration:: 42 months (the same as in the proposal)
Project status: Project settled
Equipment purchased [PL]
- Serwer obliczeniowy (16 000 PLN)
- Oprogramowanie (5 000 PLN)
- Komputer przenośny.
Information in the final report
- Publication in academic press/journals (3)
- FAMSA: Fast and accurate multiple sequence alignment of huge protein familiesAuthors:Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Adam GudyśAcademic press:Scientific Reports (rok: 2016, tom: 6, strony: article no. 33964), Wydawca: Nature ResearchStatus:PublishedDOI:10.1038/srep33964 - link to the publication
- QuickProbs - A Fast Multiple Sequence Alignment Algorithm Designed for Graphics ProcessorsAuthors:Adam Gudyś, Sebastian DeorowiczAcademic press:PLoS ONE (rok: 2014, tom: 9(2), strony: e88901), Wydawca: Public Library of ScienceStatus:PublishedDOI:10.1371/journal.pone.0088901 - link to the publication
- QuickProbs 2: towards rapid construction of high-quality alignments of large protein familiesAuthors:Adam Gudyś, Sebastian DeorowiczAcademic press:Scientific Reports (rok: 2017, tom: 7, strony: article no. 41553), Wydawca: Nature ResearchStatus:PublishedDOI:10.1038/srep41553 - link to the publication