Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Architecture and evolution of protein-RNA networks and their relevance in the process of virulence regulation

2011/03/D/NZ8/03011

Keywords:

evolution virulence bacteria systems biology protein non-coding RNA bioinformatics

Descriptors:

  • NZ8_1: Evolutionary biology

Panel:

NZ8 - Evolutionary and environmental biology: evolution, ecology, population biology, biodiversity, biogeography

Host institution :

Międzynarodowy Instytut Biologii Molekularnej i Komórkowej

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Stanisław Dunin-Horkawicz 

Number of co-investigators in the project: 3

Call: SONATA 2 - announced on 2011-09-15

Amount awarded: 720 000 PLN

Project start date (Y-m-d): 2012-09-07

Project end date (Y-m-d): 2016-09-06

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Komputer stacjonarny (4 000 PLN)
  2. SERWER HP DL380p G8 Z MACIERZĄ SSD I INTERFEJSEM INFINIBAND (50 000 PLN)

Information in the final report

  • Publication in academic press/journals (6)
  1. Functional and evolutionary analyses of Helicobacter pylori HP0231 (DsbK) protein with strong oxidative and chaperone activity characterized by a highly diverged dimerization domain
    Authors:
    Katarzyna M. Bocian-Ostrzycka, Anna M. Lasica, Stanisław Dunin-Horkawicz, Magdalena J. Grzeszczuk, Karolina Drabik, Aneta M. Dobosz, Renata Godlewska, Elżbieta Nowak, Jean-Francois Collet, Elżbieta K. Jagusztyn-Krynicka
    Academic press:
    Frontiers in Microbiology (rok: 2015, tom: 8;6, strony: 1065), Wydawca: Frontiers Media
    Status:
    Published
    DOI:
    10.3389/fmicb.2015.01065 - link to the publication
  2. Loss of conserved non-coding RNAs in genomes of bacterial endosymbionts
    Authors:
    Dorota Matelska, Malgorzata Kurkowska, Elzbieta Purta, Janusz M. Bujnicki, Stanislaw Dunin-Horkawicz
    Academic press:
    Genome Biol. Evol. (rok: 2016, tom: 8(2), strony: 426-438), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/gbe/evw007 - link to the publication
  3. Computational modeling of protein-RNA complex structures
    Authors:
    Irina Tuszynska, Dorota Matelska, Marcin Magnus, Grzegorz Chojnowski, Joanna M Kasprzak, Lukasz P Kozlowski, Stanislaw Dunin-Horkawicz, Janusz M Bujnicki
    Academic press:
    Methods (rok: 2014, tom: 65(3), strony: 310–319), Wydawca: Academic Press
    Status:
    Published
    DOI:
    10.1016/j.ymeth.2013.09.014 - link to the publication
  4. Functional and Bioinformatics Analysis of Two Campylobacter jejuni Homologs of the Thiol-Disulfide Oxidoreductase, DsbA
    Authors:
    Anna D Grabowska, Ewa Wywiał, Stanislaw Dunin-Horkawicz, Anna M Łasica, Marc MSM Wösten, Anna Nagy-Staroń, Renata Godlewska, Katarzyna Bocian-Ostrzycka, Katarzyna Pieńkowska, Paweł Łaniewski, Janusz M Bujnicki, Jos PM van Putten, E Katarzyna Jagusztyn-Krynicka
    Academic press:
    PLOS ONE (rok: 2014, tom: 2;9(9), strony: e106247), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0106247 - link to the publication
  5. Phylogenomics and sequence-structure-function relationships in the GmrSD family of Type IV restriction enzymes
    Authors:
    Magdalena A. Machnicka, Katarzyna H. Kaminska, Stanislaw Dunin-Horkawicz, Janusz Bujnicki
    Academic press:
    BMC Bioinformatics (rok: 2015, tom: 23;16, strony: 336), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s12859-015-0773-z - link to the publication
  6. tRNAmodpred: a computational method for predicting posttranscriptional modifications in tRNAs
    Authors:
    Magdalena A. Machnicka, Stanislaw Dunin-Horkawicz, Valerie de Crécy-Lagard, Janusz M. Bujnicki
    Academic press:
    Methods (rok: 2016, tom: 107, strony: 34-41), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.ymeth.2016.03.013 - link to the publication

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