Projects funded by the NCN
TUMORMAP: Mapping tumor subclones and their immune microenvironment in ultra-high spatial and molecular resolution
2020/38/E/NZ2/00305
Keywords:
machine learning probabilistic modeling spatial modeling tumor microenvironment tumor evolution tumor imaging
Descriptors:
- NZ2_7: Bioinformatics
- NZ2_8: Computational biology
Panel:
NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology
Host institution :
Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki
woj.
Principal investigator (from the host institution):
Number of co-investigators in the project: 5
Call: SONATA BIS 10 - announced on 2020-07-29
Amount awarded: 1 927 200 PLN
Project start date (Y-m-d): 2021-04-09
Project end date (Y-m-d): 2026-04-08
Project duration:: 60 months (the same as in the proposal)
Project status: Pending project
Project description
Download the project description in a pdf file
Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Information in the final report
- Publication in academic press/journals (2)
- SIEVE: joint inference of single nucleotide variants and cell phylogeny from single-cell DNA sequencing dataAuthors:S. Kang, N. Borgsmuller, M. Valecha, J. Kuipers, J.M. Alves, S. Prado-Lopez, D. Chantada, N. Beerenwinkel, D. Posada, E. SzczurekAcademic press:Genome Biology (rok: 2022, tom: 23, strony: 248), Wydawca: Biomed CentralStatus:PublishedDOI:10.1186/s13059-022-02813-9 - link to the publication
- SIEVE: joint inference of single nucleotide variants and cell phylogeny from single-cell DNA sequencing dataAuthors:S. Kang, N. Borgsmuller, M. Valecha, J. Kuipers, J.M. Alves, S. Prado-Lopez, D. Chantada, N. Beerenwinkel, D. Posada, E. SzczurekAcademic press:Genome Biology (rok: 2022, tom: 23, strony: 248), Wydawca: Biomed CentralStatus:PublishedDOI:10.1186/s13059-022-02813-9 - link to the publication