Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Development of CNV detection methods based on depth of coverage

2019/35/N/ST6/01983

Keywords:

whole exome sequencing copy number variant depth of coverage

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory
  • NZ2_7: Bioinformatics

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Warszawska

woj.

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Wiktor Tomasz Kuśmirek 

Number of co-investigators in the project: 2

Call: PRELUDIUM 18 - announced on 2019-09-16

Amount awarded: 136 800 PLN

Project start date (Y-m-d): 2020-07-09

Project end date (Y-m-d): 2024-07-08

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (8)
  1. Estimated Nucleotide Reconstruction Quality Symbols of Basecalling Tools for Oxford Nanopore Sequencing
    Authors:
    Wiktor Kuśmirek
    Academic press:
    Sensors (rok: 2023, tom: 23, strony: 6787), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/s23156787 - link to the publication
  2. Estimated Nucleotide Reconstruction Quality Symbols of Basecalling Tools for Oxford Nanopore Sequencing
    Authors:
    Wiktor Kuśmirek
    Academic press:
    Sensors (rok: 2023, tom: 23, strony: 6787), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/s23156787 - link to the publication
  3. CNVind: an open source cloud-based pipeline for rare CNVs detection in whole exome sequencing data based on the depth of coverage
    Authors:
    Wiktor Kuśmirek, Robert Nowak
    Academic press:
    BMC Bioinformatics (rok: 2022, tom: 23, strony: 45673), Wydawca: BioMed Central (BMC)
    Status:
    Published
    DOI:
    10.1186/s12859‑022‑04617‑x - link to the publication
  4. Different Strategies for Counting the Depth of Coverage in Copy Number Variation Calling Tools
    Authors:
    Wiktor Kuśmirek
    Academic press:
    Bioinformatics and Biology Insights (rok: 2022, tom: 16, strony: 45666), Wydawca: SAGE Publications
    Status:
    Published
    DOI:
    10.1177/11779322221115534 - link to the publication
  5. CNVind: an open source cloud-based pipeline for rare CNVs detection in whole exome sequencing data based on the depth of coverage
    Authors:
    Wiktor Kuśmirek, Robert Nowak
    Academic press:
    BMC Bioinformatics (rok: 2022, tom: 23, strony: 45673), Wydawca: BioMed Central (BMC)
    Status:
    Published
    DOI:
    10.1186/s12859‑022‑04617‑x - link to the publication
  6. Different Strategies for Counting the Depth of Coverage in Copy Number Variation Calling Tools
    Authors:
    Wiktor Kuśmirek
    Academic press:
    Bioinformatics and Biology Insights (rok: 2022, tom: 16, strony: 45666), Wydawca: SAGE Publications
    Status:
    Published
    DOI:
    10.1177/11779322221115534 - link to the publication
  7. Different Strategies for Counting the Depth of Coverage in Copy Number Variation Calling Tools
    Authors:
    Wiktor Kuśmirek
    Academic press:
    Bioinformatics and Biology Insights (rok: 2022, tom: 16, strony: 45666), Wydawca: SAGE Publications
    Status:
    Published
    DOI:
    10.1177/11779322221115534 - link to the publication
  8. CNVind: an open source cloud-based pipeline for rare CNVs detection in whole exome sequencing data based on the depth of coverage
    Authors:
    Wiktor Kuśmirek, Robert Nowak
    Academic press:
    BMC Bioinformatics (rok: 2022, tom: 23, strony: 45673), Wydawca: BioMed Central (BMC)
    Status:
    Published
    DOI:
    10.1186/s12859‑022‑04617‑x - link to the publication

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