Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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A comprehensive plastid database with a toolkit for phylogenetic and presequence analyses

2017/26/D/NZ8/00444

Keywords:

chromalveolates database endosymbiosis evolution plastid Paulinella targeting signal

Descriptors:

  • NZ8_1: Evolutionary biology
  • NZ8_10: Taxonomy and phylogenetic
  • NZ8_14: Other related subjects

Panel:

NZ8 - Evolutionary and environmental biology: evolution, ecology, population biology, biodiversity, biogeography

Host institution :

Uniwersytet Wrocławski, Wydział Biotechnologii

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Przemysław Gagat 

Number of co-investigators in the project: 2

Call: SONATA 13 - announced on 2017-06-14

Amount awarded: 519 000 PLN

Project start date (Y-m-d): 2018-04-10

Project end date (Y-m-d): 2023-04-09

Project duration:: 60 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Laptop Asus ROG Strix.
  2. Przenośny komputer osobisty (18 000 PLN)
  3. Monitor komputerowy (3 000 PLN)
  4. Serwer komputerowy (45 000 PLN)
  5. Tablet z klawiaturą i rysikiem.
  6. Zasilacz awaryjny UPS (7 000 PLN)
  7. Klaster komputerowy (40 000 PLN)

Information in the final report

  • Publication in academic press/journals (8)
  • Book publications / chapters in book publications (1)
  1. Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data
    Authors:
    Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch, Jakub Kała, Dominik Rafacz, Laura Bąkała, Jadwiga Słowik, Rafał Kolenda, Stefan Rödiger, Legana CHW Fingerhut, Ira R Cooke, Paweł Mackiewicz, Michał Burdukiewicz
    Academic press:
    Briefings in Bioinformatics (rok: 2022, tom: 23, strony: bbac343), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bib/bbac343 - link to the publication
  2. Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram
    Authors:
    Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Jarosław Chilimoniuk, Stefan Rödiger, Przemysław Gagat
    Academic press:
    International Journal of Molecular Sciences (rok: 2020, tom: 21, strony: 45304), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms21124310 - link to the publication
  3. Characterization of signal and transit peptides based on motif composition and taxon-specific patterns
    Authors:
    Katarzyna Sidorczuk, Paweł Mackiewicz, Filip Pietluch, Przemysław Gagat
    Academic press:
    Scientific Reports (rok: 2023, tom: brak, strony: brak), Wydawca: Nature Publishing Group UK
    Status:
    Submitted
    DOI:
    10.21203/rs.3.rs-2926521/v1 - link to the publication
  4. Prediction of Signal Peptides in Proteins from Malaria Parasite
    Authors:
    Michał Burdukiewicz , Piotr Sobczyk, Jarosław Chilimoniuk, Przemysław Gagat, Paweł Mackiewicz
    Academic press:
    International Journal of Molecular Sciences (rok: 2018, tom: 19, strony: 3709), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms19123709 - link to the publication
  5. CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides
    Authors:
    Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Mateusz Bąkała, Jadwiga Słowik, Przemysław Gagat
    Academic press:
    Pharmaceutics (rok: 2020, tom: 12, strony: 45305), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/pharmaceutics12111045 - link to the publication
  6. Dating the Origin and Spread of Plastids and Chromatophores
    Authors:
    Filip Pietluch, Paweł Mackiewicz, Katarzyna Sidorczuk, Przemysław Gagat
    Academic press:
    Systematic Biology (rok: 2022, tom: brak, strony: brak), Wydawca: Oxford University Press
    Status:
    Submitted
    DOI:
    10.1101/2022.07.01.497312 - link to the publication
  7. Testing Antimicrobial Properties of Selected Short Amyloids
    Authors:
    Przemysław Gagat, Anna Duda-Madej, Michał Ostrówka, Filip Pietluch, Alicja Seniuk, Paweł Mackiewicz, Michał Burdukiewicz
    Academic press:
    International Journal of Molecular Sciences (rok: 2023, tom: 24, strony: 804), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms24010804 - link to the publication
  8. Prediction of protein subplastid localization and origin with PlastoGram
    Authors:
    Katarzyna Sidorczuk, Przemysław Gagat, Jakub Kała, Henrik Nielsen, Filip Pietluch, Paweł Mackiewicz, Michał Burdukiewicz
    Academic press:
    Scientific Reports (rok: 2023, tom: 13, strony: 8365), Wydawca: Nature Publishing Group UK
    Status:
    Published
    DOI:
    10.1038/s41598-023-35296-0 - link to the publication
  1. The photosynthetic adventure of Paulinella spp.
    Authors:
    Przemysław Gagat, Katarzyna Sidorczuk, Filip Pietluch, Paweł Mackiewicz
    Book:
    Results and Problems in Cell Differentation (rok: 2020, tom: Symbiosis, strony: 353-386), Wydawca: Springer
    Status:
    Published

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