Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Identification and functional annotation of taxonomically-restricted genes in bacteria

2017/25/B/NZ2/00187

Keywords:

homologous genes genomics bacteria bioinformatics

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ2_2: Genomics, transcriptomics, epigenomics
  • NZ2_8: Computational biology

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet im. Adama Mickiewicza w Poznaniu, Wydział Biologii

woj. wielkopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr hab. Wojciech Karłowski 

Number of co-investigators in the project: 4

Call: OPUS 13 - announced on 2017-03-15

Amount awarded: 816 000 PLN

Project start date (Y-m-d): 2018-01-24

Project end date (Y-m-d): 2022-12-23

Project duration:: 59 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Internetowy serwer komputerowy (120 000 PLN)
  2. Wysokiej klasy stacja robocza (2 szt.) (60 000 PLN)
  3. Zasilacz awaryjny (6 814 PLN)
  4. Komputer przenośny typu MacBook Pro (2 szt.) (20 000 PLN)

Information in the final report

  • Publication in academic press/journals (4)
  1. Taxonomically Restricted Genes in Bacillus may form clusters of homologs and can be traced to a large reservoir of noncoding sequences
    Authors:
    Karlowski W.M., Varshney D., Zielezinski A.
    Academic press:
    Genome Biology and Evolution (rok: 2023, tom: -, strony: -), Wydawca: Oxford University Press
    Status:
    Accepted for publication
    DOI:
    10.1093/gbe/evad023 - link to the publication
  2. TRGdb: a universal resource for exploration of taxonomically restricted genes in bacteria
    Authors:
    Zielezinski A., Dobrychlop W., Karlowski W.M
    Academic press:
    Briefings in Bioinformatics (rok: 2023, tom: -, strony: -), Wydawca: Oxford University Press
    Status:
    Submitted
    DOI:
    brak - link to the publication
  3. Massive annotation of bacterial L-asparaginases reveals their puzzling distribution and frequent gene transfer events
    Authors:
    Zielezinski A., Loch J.I., Karlowski W.M., Jaskolski M.
    Academic press:
    Scientific Reports (rok: 2022, tom: 12, strony: 15797), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1038/s41598-022-19689-1 - link to the publication
  4. Benchmarking of alignment-free sequence comparison methods
    Authors:
    Zielezinski, A., Girgis, H.Z., Bernard, G., Leimeister, C.-A., Tang, K., Dencker, T., Lau, A.K., Röhling, S., Choi, J.J., Waterman, M.S., Comin, M., Kim, S.-H., Vinga, S., Almeida, J.S., Chan, C.X., James, B.T., Sun, F., Morgenstern, B., Karlowski, W.M.
    Academic press:
    Genome Biology (rok: 2019, tom: 20 (1), strony: 144), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1186/s13059-019-1755-7 - link to the publication

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