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Keywords

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Numerically advanced phase and amplitude demodulation for optical interference microscopy and tomography

2017/25/B/ST7/02049

Keywords:

phase and amplitude imaging interference microscopy Hilbert-Huang transform interference tomography laber-free biological microscopy

Descriptors:

  • ST7_5: Micro- and nanelectronic, optoelectronic and photonic components

Panel:

ST7 - Systems and communication engineering: electronics, communication, optoelectronics

Host institution :

Politechnika Warszawska, Wydział Mechatroniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Maciej Trusiak 

Number of co-investigators in the project: 6

Call: OPUS 13 - announced on 2017-03-15

Amount awarded: 1 265 602 PLN

Project start date (Y-m-d): 2018-01-19

Project end date (Y-m-d): 2021-07-18

Project duration:: 42 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Komputer do obliczeń naukowych (2 szt.) (20 000 PLN)
  2. Laser (2 szt.) (11 000 PLN)
  3. Stolik sterowany piezoelektrycznie i kontroler (25 000 PLN)
  4. Obiektyw mikroskopowy wysokiej jakości (2 szt.) (12 000 PLN)

Information in the final report

  • Publication in academic press/journals (24)
  • Articles in post-conference publications (20)
  • Book publications / chapters in book publications (1)
  1. DarkFocus: numerical autofocusing in digital in-line holographic microscopy using variance of computational dark-field gradient
    Authors:
    Maciej Trusiak, Jose Angel Picazo-Bueno, Piotr Zdańkowski, Vicente Mico
    Academic press:
    Optics and Lasers in Engineering (rok: 2020, tom: 134, strony: 106195), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2020.106195 - link to the publication
  2. Full-field vibration profilometry using time-averaged interference microscopy aided by variational analysis
    Authors:
    M Cywińska, M Trusiak, A Styk, K Patorski
    Academic press:
    Optics Express (rok: 2020, tom: 28(1), strony: 435-450), Wydawca: OSA - The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.28.000435 - link to the publication
  3. Single-shot slightly off-axis digital holographic microscopy with add-on module based on beamsplitter cube
    Authors:
    J. A. Picazo-Bueno, M. Trusiak, V. Micó
    Academic press:
    Optics Express (rok: 2019, tom: 27, strony: 5655-5669), Wydawca: Optical Society of America
    Status:
    Published
    DOI:
    10.1364/OE.27.005655 - link to the publication
  4. Three-level transmittance 2D grating with reduced spectrum and its self-imaging
    Authors:
    Krzysztof Patorski, Łukasz Służewski, Piotr Zdańkowski, Maria Cywińska, Maciej Trusiak
    Academic press:
    Optics Express (rok: 2019, tom: 27, strony: 1854-1868), Wydawca: Optical Society of America
    Status:
    Published
    DOI:
    10.1364/OE.27.001854 - link to the publication
  5. 5-beam grating interferometry for extended phase gradient sensing
    Authors:
    Krzysztof Patorski, Łukasz Służewski, Maciej Trusiak
    Academic press:
    Optics Express (rok: 2018, tom: 26, strony: 26872-26887), Wydawca: Optical society of America
    Status:
    Published
    DOI:
    10.1364/OE.26.026872 - link to the publication
  6. Automatized fringe pattern preprocessing using unsupervised variational image decomposition
    Authors:
    M. Cywińska, M. Trusiak, K. Patorski
    Academic press:
    Optics Express (rok: 2019, tom: 16/27, strony: 22542-22562), Wydawca: OSA - The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.27.022542 - link to the publication
  7. FPM app: an open-source MATLAB application for simple and intuitive Fourier ptychographic reconstruction
    Authors:
    Mikołaj Rogalski, Piotr Zdańkowski, Maciej Trusiak
    Academic press:
    Bioinformatics (rok: 2021, tom: btab237, strony: btab237), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btab237 - link to the publication
  8. Full volume super-resolution imaging of thick mitotic spindle using 3D AO STED microscope
    Authors:
    Piotr Zdankowski, David McGloin, Jason Swedlow
    Academic press:
    Biomedical Optics Express (rok: 2019, tom: 10, strony: 45306), Wydawca: Optical Society of America
    Status:
    Published
    DOI:
    10.001999 - link to the publication
  9. High-speed 3D shape measurement using the optimized composite fringe patterns and stereo-assisted structured light system
    Authors:
    W. Yin, S. Feng, T. Tao, L. Huang, M. Trusiak, Q. Chen, C. Zuo
    Academic press:
    Optics Express (rok: 2019, tom: 45378, strony: 2411-2431), Wydawca: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.27.002411 - link to the publication
  10. Variable zoom digital in-line holographic microscopy
    Authors:
    M Sanz, M Trusiak, J García, V Micó
    Academic press:
    Optics and Lasers in Engineering (rok: 2020, tom: 127, strony: 105939), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2019.105939 - link to the publication
  11. Common-path intrinsically achromatic optical diffraction tomography
    Authors:
    Piotr Zdańkowski, Julianna Winnik, Krzysztof Patorski, Paweł Gocłowski, Michał Ziemczonok, Michał Józwik, Małgorzata Kujawińska, and Maciej Trusiak
    Academic press:
    Biomedical Optics Express (rok: 2021, tom: 12(7), strony: 4219-4234), Wydawca: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/BOE.428828 - link to the publication
  12. DeepDensity: Convolutional neural network based estimation of local fringe pattern density
    Authors:
    M. Cywińska, F. Brzeski, W. Krajnik, K. Patorski, C. Zuo, M. Trusiak
    Academic press:
    Optics and Lasers in Engineering (rok: 2021, tom: 145, strony: 106675), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2021.106675 - link to the publication
  13. Enhancing single-shot fringe pattern phase demodulation using advanced variational image decomposition
    Authors:
    Maria Cywińska, Maciej Trusiak, Chao Zuo, Krzysztof Patorski
    Academic press:
    Journal of Optics (rok: 2019, tom: 21(4), strony: 45702), Wydawca: IOP Publishing
    Status:
    Published
    DOI:
    10.1088/2040-8986/ab078e - link to the publication
  14. Off-axis digital holographic multiplexing for rapid wavefront acquisition and processing
    Authors:
    Natan T. Shaked, Vicente Micó, Maciej Trusiak, Arkadiusz Kuś, and Simcha K. Mirsky
    Academic press:
    Advances in Optics and Photonics (rok: 2020, tom: 12(3), strony: 556-611), Wydawca: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/AOP.384612 - link to the publication
  15. Single-shot isotropic quantitative phase microscopy based on color-multiplexed differential phase contrast
    Authors:
    Y Fan, J Sun, Q Chen, X Pan, M Trusiak, C Zuo
    Academic press:
    APL Photonics (rok: 2019, tom: 4 (12), strony: 121301-1 : 121301:12), Wydawca: AIP Publishing
    Status:
    Published
    DOI:
    10.1063/1.5124535 - link to the publication
  16. Temporal phase unwrapping using deep learning
    Authors:
    W Yin, Q Chen, S Feng, T Tao, L Huang, M Trusiak, A Asundi, C Zuo
    Academic press:
    Scientific Reports (rok: 2019, tom: 9 (1), strony: 20175, 1-12), Wydawca: Nature Publishing Group
    Status:
    Published
    DOI:
    10.1038/s41598-019-56222-3 - link to the publication
  17. Grating deployed total-shear 3-beam interference microscopy with reduced temporal coherence
    Authors:
    Krzysztof Patorski, Piotr Zdańkowski, and Maciej Trusiak
    Academic press:
    Optics Express (rok: 2020, tom: 28(5), strony: 6893-6908), Wydawca: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.383201 - link to the publication
  18. Single-shot two-frame π-shifted spatially multiplexed interference phase microscopy
    Authors:
    M Trusiak, JA Picazo-Bueno, K Patorski, P Zdankowski, V Mico
    Academic press:
    Journal of Biomedical Optics (rok: 2019, tom: 24(9), strony: 096004-1 : 096004-8), Wydawca: SPIE
    Status:
    Published
    DOI:
    10.1117/1.JBO.24.9.096004 - link to the publication
  19. Spatially multiplexed interferometric microscopy: principles and applications to biomedical imaging
    Authors:
    José Ángel Picazo-Bueno, Maciej Trusiak, Javier García, Vicente Micó
    Academic press:
    Journal of Physics: Photonics (rok: 2021, tom: 3(3), strony: 34005), Wydawca: IOP Publishing
    Status:
    Published
    DOI:
    10.1088/2515-7647/abfc59 - link to the publication
  20. Automatic fringe pattern enhancement using truly adaptive period-guided bidimensional empirical mode decomposition
    Authors:
    Paweł Gocłowski, Maciej Trusiak, Azeem Ahmad, Adam Styk, Vicente Mico, Balpreet S. Ahluwalia, and Krzysztof Patorski
    Academic press:
    Optics Express (rok: 2020, tom: 28(5), strony: 6277-6293), Wydawca: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.382543 - link to the publication
  21. Hilbert–Huang transform based advanced Bessel fringe generation and demodulation for full-field vibration studies of specular reflection micro-objects
    Authors:
    Maciej Trusiak, Adam Styk, Krzysztof Patorski
    Academic press:
    Optics and Lasers in Engineering (rok: 2018, tom: 110, strony: 100-112), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2018.05.021 - link to the publication
  22. Moiré microstructure generated binary amplitude gratings for suppression of high diffraction orders
    Authors:
    Krzysztof Patorski, Maria Cywińska, Piotr Zdańkowski, MaciejTrusiak
    Academic press:
    Optics and Lasers in Engineering (rok: 2021, tom: 147, strony: 106731), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2021.106731 - link to the publication
  23. Numerically Enhanced Stimulated Emission Depletion Microscopy with Adaptive Optics for Deep-Tissue Super-Resolved Imaging
    Authors:
    P Zdankowski, M Trusiak, D McGloin, JR Swedlow
    Academic press:
    ACS Nano (rok: 2020, tom: 14, strony: 9b05891), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/acsnano.9b05891 - link to the publication
  24. Variational Hilbert Quantitative Phase Imaging
    Authors:
    Maciej Trusiak, Maria Cywińska, Vicente Mico, Jose Angel Picazo-Bueno, Chao Zuo, Piotr Zdańkowski, Krzysztof Patorski
    Academic press:
    Scientific Reports (rok: 2020, tom: 10, strony: 13955), Wydawca: Nature Publishing
    Status:
    Published
    DOI:
    10.1038/s41598-020-69717-1 - link to the publication
  1. Biological phase sample study using variational Hilbert imaging technique
    Authors:
    Maria Cywińska; Maciej Trusiak; Krzysztof Patorski
    Conference:
    SPIE Photonics West BiOS, 2019, San Francisco, California, United States (rok: 2019, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 2-7 . 02
    Status:
    Published
  2. Common-path two-shot binary checker grating based interference microscope for quantitative bio-phase imaging
    Authors:
    Piotr Zdańkowski, Krzysztof Patorski, Maria Cywińska, and Maciej Trusiak
    Conference:
    Digital Holography and Three-Dimensional Imaging 2019 (rok: 2019, ), Wydawca: OSA Technical Digest (Optical Society of America, 2019)
    Data:
    konferencja 19-23 . 05
    Status:
    Published
  3. Total-shear grating based optical diffraction tomography
    Authors:
    Piotr Zdańkowski, Julianna Winnik, Paweł Gocłowski, Maciej Trusiak
    Conference:
    Biophotonics Congress: Optics in the Life Sciences 2021 (rok: 2021, ), Wydawca: OSA The Optical Society
    Data:
    konferencja 12-16.04.2021
    Status:
    Published
  4. 3D STED Deep Tissue Imaging Using Adaptive Optics
    Authors:
    P. Zdankowski, M. Trusiak, D. Mcgloin, J.R. Swedlow
    Conference:
    Focus on Microscopy 2019 (rok: 2019, ), Wydawca: FOM2019
    Data:
    konferencja 14-17 . 04
    Status:
    Published
  5. Analysis of fringe patterns with variable density using modified variational image decomposition aided by the Hilbert Transform
    Authors:
    M. Cywińska, M. Trusiak, K. Patorski
    Conference:
    21st Czech-Polish-Slovak Optical Conference on Wave and Quantum Aspects of Contemporary Optics, 2018, Lednice, Czech Republic (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 03-07.09.2018
    Status:
    Published
  6. High space-bandwidth product phase imaging using VHQPI numerical add-on
    Authors:
    Maria Cywińska, Krzysztof Patorski, and Maciej Trusiak
    Conference:
    Biophotonics Congress: Optics in the Life Sciences 2021 (rok: 2021, ), Wydawca: OSA The Optical Society
    Data:
    konferencja 12-16.04.2021
    Status:
    Published
  7. Variational approach in time-averaged interference microscopy for full-field vibration profilometry
    Authors:
    Maria Cywińska, Maciej Trusiak, Adam Styk, and Krzysztof Patorski
    Conference:
    Digital Holography and Three-Dimensional Imaging 2019 (rok: 2019, ), Wydawca: OSA Technical Digest (Optical Society of America, 2019)
    Data:
    konferencja 19-23 . 05
    Status:
    Published
  8. Amplitude checker grating-based multichannel lateral shear interferometry for extended aberration sensing
    Authors:
    Łukasz Służewski, Krzysztof Patorski, Maciej Trusiak
    Conference:
    SPIE Optical Engineering + Applications, 2018, San Diego, California, United States (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 18-23.08.2018
    Status:
    Published
  9. An adaptive optics 3D STED microscope for super-resolution imaging of thick samples with background noise suppression using digital image processing
    Authors:
    Piotr Zdańkowski, Maciej Trusiak, Maria Cywińska, Jason R. Swedlow
    Conference:
    SPECKLE 2018: VII International Conference on Speckle Metrology, 2018, Janów Podlaski, Poland (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 10-12.09.2018
    Status:
    Published
  10. Modified variational image decomposition algorithm aided by the Hilbert transform as an alternative to 2D Hilbert-Huang transform for fringe pattern phase retrieval
    Authors:
    Maria Cywińska, Maciej Trusiak, Krzysztof Patorski, Jose Angel Picazo-Bueno, Vicente Mico
    Conference:
    SPECKLE 2018: VII International Conference on Speckle Metrology, 2018, Janów Podlaski, Poland (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 10-12.09.2018
    Status:
    Published
  11. Single-frame fringe pattern analysis using modified variational image decomposition aided by the Hilbert transform for fast full-field quantitative phase imaging
    Authors:
    Maria Cywińska, Maciej Trusiak, Vicente Mico, Krzysztof Patorski
    Conference:
    SPIE Photonics Europe, 2018, Strasbourg, France (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 22-26.04.2018
    Status:
    Published
  12. Single-shot two-frame interference microscopy for robust quantitative phase imaging of fixed and dynamic samples
    Authors:
    Maciej Trusiak, Jose Angel Picazo-Bueno, Mikołaj Rogalski, Maria Cywinska, Piotr Zdańkowski, Vicente Micó
    Conference:
    SPIE Optical Metrology (rok: 2021, ), Wydawca: SPIE
    Data:
    konferencja 21-26.06.2021
    Status:
    Published
  13. Upgrading a brightfield optical microscope into a robust numerically advanced interference-based phase imager
    Authors:
    Maciej Trusiak, Krzysztof Patorski, Piotr Zdańkowski, Maria Cywińska, Vicente Mico, Jose-Angel Picazo-Bueno, and Javier Garcia
    Conference:
    Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP) (rok: 2019, ), Wydawca: OSA Technical Digest (Optical Society of America, 2019)
    Data:
    konferencja 24-27 . 06
    Status:
    Published
  14. Adaptive information retrieval in automated fringe based full-field optical metrology
    Authors:
    K. Patorski, M. Trusiak
    Conference:
    SPECKLE 2018: VII International Conference on Speckle Metrology, 2018, Janów Podlaski, Poland (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 10-12.09.2018
    Status:
    Published
  15. Machine-learning based fast unsupervised variational image decomposition for fringe pattern analysis
    Authors:
    Maria Cywińska, Maciej Trusiak, Krzysztof Patorski
    Conference:
    SPIE Optical Engineering + Applications - Interferometry XX (rok: 2020, ), Wydawca: SPIE Proceedings
    Data:
    konferencja 24-28.08.2020
    Status:
    Published
  16. Moiré effect-based interference microscopy for biospecimen characterization
    Authors:
    Maciej Trusiak, Vicente Mico, Jose Angel Picazo-Bueno, Maria Cywińska, Piotr Zdańkowski, Krzysztof Patorski
    Conference:
    SPIE Optical Engineering + Applications, 2018, San Diego, California, United States (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 18-23.08.2018
    Status:
    Published
  17. Practical Improvements Into the Fourier Ptychographic Microscopy Reconstruction Path
    Authors:
    Mikołaj Rogalski, Piotr Zdańkowski, Maciej Trusiak
    Conference:
    Biophotonics Congress: Optics in the Life Sciences 2021 (rok: 2021, ), Wydawca: OSA The Optical Society
    Data:
    konferencja 12-16.04.2021
    Status:
    Published
  18. Multi-beam spatially multiplexed interference microscopy for phase objects examination
    Authors:
    Piotr Zdańkowski, Vicente Mico, Jose Angel Picazo-Bueno, Krzysztof Patorski, Maciej Trusiak
    Conference:
    SPIE Optical Engineering + Applications, 2018, San Diego, California, United States (rok: 2018, ), Wydawca: SPIE International Society for Optics and Photonics
    Data:
    konferencja 19-23.08.2018
    Status:
    Published
  19. Quasi-noise-free stimulated emission depletion microscopy imaging of thick samples using adaptive optics and block-matching 3D filtering
    Authors:
    Piotr Zdankowski, Maciej Trusiak, David McGloin, and Jason R. Swedlow
    Conference:
    Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP) (rok: 2019, ), Wydawca: OSA Technical Digest (Optical Society of America, 2019)
    Data:
    konferencja 24-27 . 06
    Status:
    Published
  20. Variational Hilbert Phase Imaging for Prostate Cell Analysis
    Authors:
    M. Cywinska, M. Trusiak, K. Patorski, P. Zdankowski, J.A. Picazo-Bueno, V. Mico
    Conference:
    Focus on Microscopy 2019 (rok: 2019, ), Wydawca: FOM2019
    Data:
    konferencja 14-17 . 04
    Status:
    Published
  1. Interferometric Methods in NDE
    Authors:
    Krzysztof Patorski, Maciej Trusiak
    Book:
    Handbook of Advanced Non-Destructive Evaluation (rok: 2018, tom: 1, strony: 45313), Wydawca: Springer, Cham
    Status:
    Published

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