Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Heavy metal and antibiotic metabolism in Arctic bacterial microbiocenoses - metagenomic, metatranscriptomic and genomic analyses

2016/22/E/NZ8/00340

Keywords:

Arctic antibiotic heavy metal bacterial microbiocenosis metgenomics metatranscriptomics genomics

Descriptors:

  • NZ8_4: Biodiversity
  • NZ8_2: Ecology
  • NZ9_8: Environmental microbiology

Panel:

NZ8 - Evolutionary and environmental biology: evolution, ecology, population biology, biodiversity, biogeography

Host institution :

Uniwersytet Warszawski, Wydział Biologii

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Łukasz Dziewit 

Number of co-investigators in the project: 7

Call: SONATA BIS 6 - announced on 2016-06-15

Amount awarded: 1 965 000 PLN

Project start date (Y-m-d): 2017-04-20

Project end date (Y-m-d): 2023-04-19

Project duration:: 72 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Przenośna zamrażarka (-20ᵒC) (np. MPRF 35, firmy Angelantoni Life Science s.r.l.) (2 szt.) (26 000 PLN)
  2. Szafa chłodnicza z wytrząsarkami laboratoryjnymi (aparatura wytworzona w ramach projektu) (30 000 PLN)
  3. Zamrażarka niskotemperaturowa (-80ᵒC) (np. model PLATINUM 340V Next, firmy CHEMINST) (44 000 PLN)
  4. Homogenizator (np. FastPrep-24™ 5G, firmy MP Biomedicals) (45 000 PLN)
  5. Serwer komputerowy do obliczeń.

Information in the final report

  • Publication in academic press/journals (6)
  • Book publications / chapters in book publications (1)
  1. Revealing the diversity of bacteria and fungi in the active layer of permafrost at Spitsbergen island (Arctic) – Combining classical microbiology and metabarcoding for ecological and bioprospecting exploration
    Authors:
    Dziurzynski Mikolaj, Gorecki Adrian, Pawlowska Julia, Istel Lukasz, Decewicza Przemysław, Golec Piotr, Styczynski Michał, Poszytek Krzysztof, Rokowska Anna, Gorniak Dorota, Dziewit Łukasz
    Academic press:
    Science of the Total Environment (rok: 2023, tom: 856, part 2, strony: 159072), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.scitotenv.2022.159072 - link to the publication
  2. Literature-based, manually-curated database of PCR primers for the detection of antibiotic resistance genes in various environments.
    Authors:
    Gorecki Adrian, Decewicz Przemysław, Dziurzynski Mikołaj, Janeczko Anna, Drewniak Łukasz, Dziewit Łukasz
    Academic press:
    Water Research (rok: 2019, tom: 161, strony: 211-221), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.watres.2019.06.009 - link to the publication
  3. Metaplasmidome-encoded functions of Siberian low-centered polygonal tundra soils
    Authors:
    Gorecki Adrian, Holm Stine, Dziurzynski Mikolaj, Winkel Matthias, Yang Sizhong, Liebner Susanne, Wagner Dirk, Dziewit Lukasz, Horn Fabian
    Academic press:
    ISME Journal (rok: 2021, tom: 15, strony: 3258-3270), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1038/s41396-021-01003-y - link to the publication
  4. Development and validation of novel PCR primers for identification of plasmid-mediated colistin resistance (mcr) genes in various environmental settings
    Authors:
    Gorecki Adrian, Musialowski Marcin, Wolacewicz Mikolaj, Decewicz Przemyslaw, Ferreira Catarina, Vejmelkova Dana, Grzesiuk Malgorzata, Manaia Celia M., Bartacek Jan, Dziewit Łukasz
    Academic press:
    Journal of Hazardous Materials (rok: 2022, tom: 425, strony: 127936), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.jhazmat.2021.127936 - link to the publication
  5. Draft genome sequence of Arctic, heavy metal-resistant Agrococcus sp. strain ARC_14 isolated from active layer of permafrost from Spitsbergen (Norway).
    Authors:
    Dziurzynski Mikołaj, Rokowska Anna, Gorecki Adrian, Decewicz Przemysław, Szych Anna, Dziewit Łukasz
    Academic press:
    Microbiology Resource Announcements (rok: 2022, tom: 11, strony: e00221-22), Wydawca: American Society for Microbiology (ASM Journals)
    Status:
    Published
    DOI:
    10.1128/mra.00221-22 - link to the publication
  6. Development of the LCPDb-MET database facilitating selection of PCR primers for the detection of metal metabolism and resistance genes in bacteria
    Authors:
    Dziurzynski Mikolaj, Gorecki Adrian, Decewicz Przemysław, Ciuchcinski Karol, Dabrowska Maria, Dziewit Łukasz
    Academic press:
    Ecological Indicators (rok: 2022, tom: 145, strony: 109606), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.ecolind.2022.109606 - link to the publication
  1. Simple, reliable, and time-efficient manual annotation of bacterial genomes with MAISEN
    Authors:
    Dziurzynski Mikolaj, Decewicz Przemyslaw, Ciuchcinski Karol, Gorecki Adrian, Dziewit Lukasz
    Book:
    Methods in Molecular Biology / Bacterial Pangenomics, second edition (rok: 2021, tom: 2242, strony: 221-229), Wydawca: Springer Protocols/Humana Press
    Status:
    Published

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