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Information of the project and the call

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Grammatical inference methods in classification of amyloidogenic proteins

2016/21/B/ST6/02158

Keywords:

grammatical inference formal grammars and automata induction methods machine learning classification of amyloidogenic proteins

Descriptors:

  • ST6_11: Machine learning, statistical data processing and applications using signal processing (e.g. speech, image, video)
  • ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Wrocławska

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr hab. Olgierd Unold 

Number of co-investigators in the project: 5

Call: OPUS 11 - announced on 2016-03-15

Amount awarded: 390 000 PLN

Project start date (Y-m-d): 2017-01-25

Project end date (Y-m-d): 2021-01-24

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (6)
  • Articles in post-conference publications (13)
  1. An adaptive parallel algorithm for finite language decomposition
    Authors:
    Tomasz Jastrząb, Zbigniew J. Czech, Wojciech Wieczorek
    Academic press:
    Applied Intelligence (rok: 2021, tom: 1, strony: 45313), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s10489-021-02488-y - link to the publication
  2. Parallel algorithm for minimal nondeterministic finite automata inference
    Authors:
    Tomasz Jastrząb, Zbigniew Czech, Wojciech Wieczorek
    Academic press:
    Fundamenta Informaticae (rok: 2021, tom: 178, strony: 203-227), Wydawca: Annals of Polish Mathematical Society (PTM)
    Status:
    Published
    DOI:
    10.3233/FI-2021-2004 - link to the publication
  3. Visual Report Generation Tool for Grammar-Based Classifier System
    Authors:
    Olgierd Unold, Agnieszka Kaczmarek, Łukasz Culer
    Academic press:
    International Journal of Machine Learning and Computing (rok: 2018, tom: 8, strony: 80-84), Wydawca: IACSIT Press
    Status:
    Published
    DOI:
    10.18178/ijmlc.2018.8.1.667 - link to the publication
  4. Split-Based Algorithm for Weighted Context-Free Grammar Induction
    Authors:
    Mateusz Gabor, Wojciech Wieczorek, Olgierd Unold
    Academic press:
    Applied Sciences (rok: 2021, tom: 11 (3), strony: 45304), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/app11031030 - link to the publication
  5. Answer Set Programming for Regular Inference
    Authors:
    WojciechWieczorek , Tomasz Jastrzab, Olgierd Unold
    Academic press:
    Applied Sciences (rok: 2020, tom: 10(21), strony: 45309), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/app10217700 - link to the publication
  6. Parsing expression grammars and their induction algorithm
    Authors:
    Wojciech Wieczorek, Olgierd Unold, Łukasz Strąk
    Academic press:
    Applied Sciences (rok: 2020, tom: 10(23), strony: 45307), Wydawca: b.d.
    Status:
    Published
    DOI:
    10.3390/app10238747 - link to the publication
  1. A comparison of selected variable ordering methods for NFA induction
    Authors:
    Tomasz Jastrząb
    Conference:
    Computational Science – ICCS 2019 (rok: 2019, ), Wydawca: Springer
    Data:
    konferencja 43628
    Status:
    Published
  2. Performance Evaluation of Selected Variable Ordering Methods for NFA Induction
    Authors:
    Tomasz Jastrząb
    Conference:
    14th International Conference on Grammatical Inference - Extended Abstracts (rok: 2018, ), Wydawca: Politechnika Wrocławska
    Data:
    konferencja 43348
    Status:
    Published
  3. Grammatical Inference by Answer Set Programming
    Authors:
    Wojciech Wieczorek, Łukasz Strąk, Arkadiusz Nowakowski, Olgierd Unold
    Conference:
    Computational Science – ICCS 2020 (rok: 2020, ), Wydawca: Springer
    Data:
    konferencja 3-5.06.2020
    Status:
    Published
  4. On Superlinear Speedups of a Parallel NFA Induction Algorithm
    Authors:
    Tomasz Jastrząb
    Conference:
    Proceedings of the 2019 Parallel Computing (ParCo2019) Conference (rok: 2020, ), Wydawca: IO Press
    Data:
    konferencja 43718
    Status:
    Published
  5. Two Parallelization Schemes for the Induction of Nondeterministic Finite Automata on PCs
    Authors:
    Tomasz Jastrząb
    Conference:
    12th International Conference on Parallel Processing and Applied Mathematics, PPAM 2017 (rok: 2018, ), Wydawca: Springer International Publishing
    Data:
    konferencja 10-13 września 2017
    Status:
    Published
  6. Visualization of Membership Distribution in Strings Using Heat Maps
    Authors:
    Łukasz Culer, Olgierd Unold
    Conference:
    International Conference on Artificial Intelligence and Soft Computing (rok: 2020, ), Wydawca: Springer, Cham
    Data:
    konferencja 12-14.10.2020
    Status:
    Published
  7. Generating Minimal Nondeterministic Finite Automata Using a Parallel Algorithm
    Authors:
    Tomasz Jastrząb, Zbigniew Czech, Wojciech Wieczorek
    Conference:
    International Symposium on Parallel and Distributed Computing 2020 (rok: 2020, ), Wydawca: IEEE
    Data:
    konferencja 44017
    Status:
    Published
  8. Suffix Classication Trees
    Authors:
    Wojciech Wieczorek, Olgierd Unold, Łukasz Strąk
    Conference:
    International Conference on Grammatical Inference (rok: 2018, ), Wydawca: Proceedings of Machine Learning Research
    Data:
    konferencja 5-7.09.2018
    Status:
    Published
  9. How implicit negative evidence improve weighted context-free grammar induction
    Authors:
    Olgierd Unold, Mateusz Gabor
    Conference:
    ICAISC: International Conference on Artificial Intelligence and Soft Computing (rok: 2019, ), Wydawca: Springer
    Data:
    konferencja 43632
    Status:
    Published
  10. Unsupervised Grammar Induction for Revealing the Internal Structure of Protein Sequence Motifs
    Authors:
    Olgierd Unold, Mateusz Gabor, Witold Dyrka
    Conference:
    The 18th International Conference on Artificial Intelligence in Medicine AIME 2020 (rok: 2020, ), Wydawca: Springer, Cham
    Data:
    konferencja 25-28.09.2020
    Status:
    Published
  11. Unsupervised Statistical Learning of Context-free Grammar
    Authors:
    Olgierd Unold, Mateusz Gabor, Wojciech Wieczorek
    Conference:
    The 12th International Conference on Agents and Artificial Intelligence (rok: 2020, ), Wydawca: ScitePress
    Data:
    konferencja 22-24.02.2020
    Status:
    Published
  12. GP-BASED GRAMMATICAL INFERENCE FOR CLASSIFICATION OF AMYLOIDOGENIC SEQUENCES
    Authors:
    Wojciech Wieczorek, Olgierd Unold
    Conference:
    CIBB2017: Computational Intelligence methods for Bioinformatics and Biostatistics (rok: 2017, ), Wydawca: Springer
    Data:
    konferencja 7-9.09.2017
    Status:
    Published
  13. Parallel Induction of Nondeterministic Finite Automata Revisited
    Authors:
    Tomasz Jastrząb
    Conference:
    International Conference of Computational Methods in Sciences and Engineering (ICCMSE) (rok: 2017, ), Wydawca: American Institute of Physics Publishing
    Data:
    konferencja 21-25 kwiecień 2017
    Status:
    Published

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