Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Determination of the influence of 5' end of RNA modifications and nucleotide or amino acid sequence on the electrostatic interaction energy of IFIT proteins with RNA

2016/21/N/ST4/03722

Keywords:

electrostatic interaction energy electron density IFIT proteins RNA

Descriptors:

  • ST4_15: Colloid chemistry
  • ST4_4: Theoretical and computational chemistry
  • ST4_13: Solid-state chemistry, surface physicochemistry

Panel:

ST4 - Chemistry: physical chemistry/chemical physics, theoretical chemistry, analytical chemistry, inorganic chemistry, organic chemistry, method development

Host institution :

Uniwersytet Warszawski, Wydział Chemii

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Urszula Budniak 

Number of co-investigators in the project: 2

Call: PRELUDIUM 11 - announced on 2016-03-15

Amount awarded: 143 800 PLN

Project start date (Y-m-d): 2017-02-17

Project end date (Y-m-d): 2022-02-16

Project duration:: 60 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Zestaw komputerowy (13 000 PLN)
  2. laptop.

Information in the final report

  • Publication in academic press/journals (2)
  • Articles in post-conference publications (5)
  1. The Role of Electrostatic Interactions in IFIT5-RNA Complexes Predicted by the UBDB+EPMM Method
    Authors:
    Urszula Anna Budniak, Natalia Katarzyna Karolak, Marta Kulik, Krzysztof Młynarczyk, Maria Wiktoria Górna* and Paulina Maria Dominiak*
    Academic press:
    The Journal of Physical Chemistry B (rok: 2022, tom: 126, strony: 9152-9167), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/acs.jpcb.2c04519 - link to the publication
  2. Electrostatic interactions of IFIT1 proteins with RNA having various 5'ends
    Authors:
    Urszula Anna Budniak, Paulina Maria Dominiak*
    Academic press:
    The Journal of Physical Chemistry B (rok: 2023, ), Wydawca: American Chemical Society
    Status:
    Submitted
    DOI:
    brak - link to the publication
  1. UBDB databank as a tool for investigating electrostatic interactions between proteins and RNA
    Authors:
    Urszula A. Budniak, Paulina M. Dominiak
    Conference:
    Prof. Krzysztof W. Szewczyk's VII Intercollegiate Biotechnology Symposium SYMBIOZA (rok: 2018, ), Wydawca: Uniwersytet Warszawski, Wydział Biologii
    Data:
    konferencja 11-13.05.2018
    Status:
    Published
  2. UBDB+EPMM approach as a tool for investigating electrostatic interactions between proteins and RNA
    Authors:
    U. Budniak , P. Dominiak
    Conference:
    33rd European Crystallographic Meeting, 23-27.08.2022, Versailles, Francja (rok: 2022, ), Wydawca: IUCr Journals
    Data:
    konferencja 23-27.08.2022
    Status:
    Published
  3. Analysis of electrostatic interaction energies in complexes of IFIT5 proteins with RNA via UBDB+EPMM method
    Authors:
    U. A. Budniak and P. M. Dominiak
    Conference:
    School on Electron Crystallography (rok: 2021, ), Wydawca: IUCr Journals
    Data:
    konferencja 11-13.08.2021
    Status:
    Published
  4. The influence of nucleotide sequence of RNA 5′ end on the electrostatic interaction energy of IFIT5 proteins with RNA
    Authors:
    U. Budniak and P. Dominiak
    Conference:
    31st European Crystallographic Meeting, 22-27.08.2018, Oviedo, Hiszpania (rok: 2018, ), Wydawca: IUCr Jurnals
    Data:
    konferencja 43334
    Status:
    Published
  5. The role of electrostatic interactions in IFIT proteins complexed with RNA with different 5′ end predicted by the UBDB+EPMM method
    Authors:
    U. Budniak and P. Dominiak
    Conference:
    32nd European Crystallographic Meeting, 18-23.08.2019, Wiedeń, Austria (rok: 2019, ), Wydawca: IUCr Jurnals
    Data:
    konferencja 18-23.09.2019
    Status:
    Published

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