Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Methods for supervised and unsupervised classification of metagenomic DNA fragments extracted from various environmental samples

2015/19/D/ST6/03252

Keywords:

string comparison sequence similarity searching classification of metagenomic reads taxonomic classification binning metagenomics

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

woj. śląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Jolanta Kawulok 

Number of co-investigators in the project: 1

Call: SONATA 10 - announced on 2015-09-15

Amount awarded: 306 840 PLN

Project start date (Y-m-d): 2016-09-06

Project end date (Y-m-d): 2022-09-05

Project duration:: 72 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Wysokiej klasy komputer przenośny z dodatkowym monitorem (15 000 PLN)

Information in the final report

  • Publication in academic press/journals (1)
  • Articles in post-conference publications (3)
  • Book publications / chapters in book publications (1)
  1. Environmental metagenome classification for constructing a microbiome fingerprint
    Authors:
    Jolanta Kawulok, Michal Kawulok, Sebastian Deorowicz
    Academic press:
    Biology Direct (rok: 2019, tom: 14, strony: 20), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s13062-019-0251-z - link to the publication
  1. A genetic algorithm for classifying metagenomic data
    Authors:
    Jolanta Kawulok, Michal Kawulok
    Conference:
    The Genetic and Evolutionary Computation Conference (GECCO '22) (rok: 2022, ), Wydawca: Association for Computing Machinery
    Data:
    konferencja July 9-13, 2022
    Status:
    Published
  2. Metagenomic Clustering in Search of Common Origin
    Authors:
    Jolanta Kawulok, Michal Kawulok
    Conference:
    11th International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2020)/13th International Joint Conference on Biomedical Engineering Systems and Technologies (BIOSTEC 2020) (rok: 2020, ), Wydawca: SciTePress
    Data:
    konferencja 43885
    Status:
    Published
  3. Environmental Metagenome Classification for Soil-based Forensic Analysis
    Authors:
    Jolanta Kawulok, Michal Kawulok
    Conference:
    9th International Conference on Bioinformatics Models, Methods and Algorithms (BIOINFORMATICS 2018) (rok: 2018, ), Wydawca: Proceedings of the 11th International Joint Conference on Biomedical Engineering Systems and Technologies - Volume 4: BIOINFORMATICS
    Data:
    konferencja 19 sty 2018 – 21 sty 2018
    Status:
    Published
  1. ANALYSIS OF THE READS OBTAINED FROM METAGENOME SEQUENCING
    Authors:
    Jolanta Kawulok
    Book:
    Artificial Intelligence and Data Processing. The monograph presenting the achievements of the Silesian University of Technology research staff (), Wydawca: Politechnika Śląska
    Status:
    Accepted for publication

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