Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Bioinformatics tools for automated detection of tumor and its heterogeneity based on cancer metabolome profiling with imaging mass spectrometry

2015/19/B/ST6/01736

Keywords:

bioinformatics MALDI-IMS mass spectra analysis mathematical modelling artificial intelligence applied statistics cancer

Descriptors:

  • ST6_11: Machine learning, statistical data processing and applications using signal processing (e.g. speech, image, video)
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • NZ2_4: Metabolomics

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

woj. śląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Joanna Polańska 

Number of co-investigators in the project: 7

Call: OPUS 10 - announced on 2015-09-15

Amount awarded: 850 640 PLN

Project start date (Y-m-d): 2016-06-28

Project end date (Y-m-d): 2020-06-27

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Ingenuity Pathway Analysis licencja (40 000 PLN)
  2. TeamViewer licencja (2 szt.) (20 000 PLN)
  3. Serwer dyskowy NAS (11 890 PLN)
  4. profesjonalny komputer przenośny (2 szt.) (20 000 PLN)
  5. Matlab licencja.
  6. wysokorozdzielczy monitor.

Information in the final report

  • Publication in academic press/journals (26)
  • Articles in post-conference publications (35)
  • Book publications / chapters in book publications (7)
  1. Integrative multiomics study for validation of mechanisms in radiation-induced ischemic heart disease in Mayak workers
    Authors:
    Papiez A., Azimzadeh O., Azizova T., Moseeva M., Anastasov M., Smida J., Tapio S., Polanska J.
    Academic press:
    PLoS ONE (rok: 2018, tom: 13(12), strony: e0209626), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0209626 - link to the publication
  2. Method for deisotoping based on fuzzy inference systems.
    Authors:
    Glodek A. Joanna Polańska J.
    Academic press:
    Mathematica Applicanda (rok: 2018, tom: 46, strony: 77–86), Wydawca: Polskie Towarzystwo Matematyczne
    Status:
    Published
    DOI:
    10.14708/ma.v46i1.6384 - link to the publication
  3. Proteomic profile of melanoma cell-derived sEV in patients' plasma: a potential correlate of melanoma progression
    Authors:
    Pietrowska M., Zebrowska A., Gawin M., Marczak L., Sharma P., Mondal S., Mika J., Polańska J., Ferrone S., Kirkwood J. M., Widlak P., Whiteside T. L.
    Academic press:
    Journal of Extracellular Vesicles (rok: 2020, tom: 10, strony: 45305), Wydawca: Wiley Periodicals, LLC
    Status:
    Published
    DOI:
    10.1002/jev2.12063 - link to the publication
  4. DiviK: Divisive intelligent K-means for hands-free unsupervised clustering in biological big data (publikacja złożona w czasopiśmie bmc bioinformatics)
    Authors:
    Mrukwa Grzegorz, Polanska Joanna
    Academic press:
    arXiv [q-bio.QM] (rok: 2020, tom: nd, strony: 2009,10706), Wydawca: arXiv.org
    Status:
    Published
    DOI:
    brak - link to the publication
  5. Region-Specific Methylation Profiling in Acute Myeloid Leukemia
    Authors:
    Cecotka A., Polańska J.
    Academic press:
    Interdisciplinary Sciences: Computational Life Sciences (rok: 2018, tom: 10, strony: 33–42), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s12539-018-0285-4 - link to the publication
  6. A new approach to isotopic envelope identification by analysis of spatial distribution of components in Mass Spectrometry Imaging
    Authors:
    Glodek A., Joanna Polańska J., Marta Gawin M.
    Academic press:
    PROTEINS: Structure, Function, and Bioinformatics (rok: 2021, tom: bd, strony: bd), Wydawca: Wiley Periodicals LLC
    Status:
    Submitted
    DOI:
    brak - link to the publication
  7. Discrimination of normal oral mucosa from oral cancer by mass spectrometry imaging of proteins and lipids
    Authors:
    Bednarczyk K, Gawin M., Chekan M., Kurczyk A., Mrukwa G., Monika Pietrowska M., Polanska J., Widlak P.
    Academic press:
    Journal of Molecular Histology (rok: 2019, tom: 50(1), strony: 45301), Wydawca: 2,937
    Status:
    Published
    DOI:
    10.1007/s10735-018-9802-3 - link to the publication
  8. Discrimination of papillary thyroid cancer from non-cancerous thyroid tissue based on lipid profiling by mass spectrometry imaging
    Authors:
    Wojakowska A., Cole L., Chekan M., Bednarczyk K., Maksymiak M., Oczko-Wojciechowska M., Jarząb B., Clench M., Polańska J., Pietrowska M., Widlak P.
    Academic press:
    Endokrynologia Polska (rok: 2018, tom: 69, strony: 45330), Wydawca: Via Medica
    Status:
    Published
    DOI:
    10.5603/EP.a2018.0003 - link to the publication
  9. GaMRed – adaptive filtering of high-throughput biological data
    Authors:
    Marczyk M., Jaksik R., Polanski A., Polanska J.
    Academic press:
    IEEE/ACM Transactions on Computational Biology and Bioinformatics (rok: 2020, tom: 17, strony: 147-159), Wydawca: Institute of Electrical and Electronics Engineers
    Status:
    Published
    DOI:
    10.1109/TCBB.2018.2858825 - link to the publication
  10. Kras mutations and PU.1 promoter methylation are new pathways in murine radiation-induced AML
    Authors:
    O'Brien G., Cruz-Garcia L., Zyla J., , Brown N., Finnon R., Polanska J., Badie C.
    Academic press:
    Carcinogenesis (rok: 2020, tom: 41(8), strony: 1104–1112), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/carcin/bgz175 - link to the publication
  11. MiMSeg - an algorithm for automated detection of tumor tissue on NMR apparent diffusion coefficient maps
    Authors:
    Binczyk F., Bram S., Weber C., Goetz M., Maier-Hein K., Meinzer H., Bobek-Billewicz B., Tarnawski R., Polanska J.
    Academic press:
    Information Sciences (rok: 2017, tom: 384, strony: 235–248), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.ins.2016.07.052 - link to the publication
  12. Platelets Restrict the Oxidative Burst in Phagocytes and Facilitate Primary Progressive Tuberculosis
    Authors:
    Scheuermann L., Pei G., Domaszewska T., Zyla J., Oberbeck-Müller D., Bandermann S., Feng Y., Ruiz Moreno J.S., Bastian B., Mollenkopf H., Kaufmann S., Dorhoi A.
    Academic press:
    AMERICAN JOURNAL OF RESPIRATORY AND CRITICAL CARE MEDICINE (rok: 2020, tom: 202, strony: 730-744), Wydawca: AMER THORACIC SOC
    Status:
    Published
    DOI:
    10.1164/rccm.201910-2063OC - link to the publication
  13. BatchI: Batch effect Identication in high-throughput screening data using a dynamic programming algorithm
    Authors:
    Papiez A., Polanska J., Marczyk M., Polanski A.
    Academic press:
    Bioinformatics (rok: 2019, tom: 35(11), strony: 1885-1892), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/bty900 - link to the publication
  14. Identification of two novel mutations in human acute myeloid leukemia cases
    Authors:
    O'Brien, G., Zyla, J., Manola, K., Pagoni, M., Polanska, J., Badie, C.
    Academic press:
    Leukemia and Lymphoma (rok: 2021, tom: 62 (2), strony: 454-461), Wydawca: Taylor & Francis Group
    Status:
    Published
    DOI:
    10.1080/10428194.2020.1832664 - link to the publication
  15. Ionizing radiation affects the composition of the proteome of extracellular vesicles released by head-and-neck cancer cells in vitro
    Authors:
    Abramowicz A., Wojakowska A., Marczak Ł., Lysek-Gladysinska M., Smolarz M., Story M.D., Polańska J., Widlak P., Pietrowska M.
    Academic press:
    Journal of Radiation Research (rok: 2019, tom: 60(3), strony: 289-297), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/jrr/rrz001 - link to the publication
  16. Low-dose radiation accelerates aging of the T-cell receptor repertoire in CBA/Ca mice
    Authors:
    Candeias S., Mika J., Finnon P., Verbiest T., Finnon R., Brown N., Bouffler S., Polanska J., Badie C.
    Academic press:
    Cellular and Molecular Life Sciences (rok: 2017, tom: 74, strony: 4339–4351), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s00018-017-2581-2 - link to the publication
  17. Molecular Profiling for Predictors of Radiosensitivity in Patients with Breast or Head-and-Neck Cancer
    Authors:
    Drobin K., Marczyk M., Halle M., Danielsson D., Papiez A., Sangsuwan T., Bendes A., Hong M., Qundos U., Harms-Ringdahl M., Wersäll P., Polanska J., Schwenk J., Haghdoost S.
    Academic press:
    Cancers (rok: 2020, tom: 12, strony: 45309), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/cancers12030753 - link to the publication
  18. Molecular profiles of thyroid cancer subtypes: Classification based on features of tissue revealed by mass spectrometry imaging
    Authors:
    Pietrowska M., Hanna Diehl H., Mrukwa G., Kalinowska-Herok M., Gawin M, Chekan M., Elm J., Drazek G., Krawczyk A., Lange D., Meyer H., Polanska J., Henkel C., Widlak P.
    Academic press:
    Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics (rok: 2017, tom: 1865, strony: 837-845), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.006 - link to the publication
  19. Systemic Effects of Radiotherapy and Concurrent Chemo-Radiotherapy in Head and Neck Cancer Patients—Comparison of Serum Metabolome Profiles
    Authors:
    Jelonek K., Krzywon A., Jablonska P., Slominska E.M., Smolenski R.T., Polanska J., Rutkowski T., Mrochem-Kwarciak J., Skladowski K., Widlak P.
    Academic press:
    Metabolites (rok: 2020, tom: 10(60), strony: 45306), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/metabo10020060 - link to the publication
  20. Gene set enrichment for reproducible science: comparison of CERNO and eight other algorithms
    Authors:
    Joanna Zyla J., Marczyk M., Domaszewska T., Kaufmann S., Polanska J., Weiner J.
    Academic press:
    Bioinformatics (rok: 2019, tom: 35(24), strony: 5146–5154), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btz447 - link to the publication
  21. Germline DNA Retention in Murine and Human Rearranged T Cell Receptor Gene Coding Joints: Alternative Recombination Signal Sequences and V(D)J Recombinase Errors
    Authors:
    Mika J., Kabacik S., Badie C., Polanska J., Candéias S.
    Academic press:
    Frontiers in Immunology (rok: 2019, tom: 2,24791666666667, strony: 45306), Wydawca: Front. Immunol.
    Status:
    Published
    DOI:
    10.3389/fimmu.2019.02637 - link to the publication
  22. Initializing the EM Algorithm for Univariate Gaussian, Multi-Component, Heteroscedastic Mixture Models by Dynamic Programming Partitions
    Authors:
    Polanski A., Marczyk M., Pietrowska M., Widlak P., Polanska J.
    Academic press:
    International Journal of Computational Methods (rok: 2018, tom: 15, strony: 1850012-1 - 1850012-21), Wydawca: World Scientific
    Status:
    Published
    DOI:
    10.1142/S0219876218500123 - link to the publication
  23. Machine learning techniques combined with dose profiles indicate radiation response biomarkers
    Authors:
    Papież A., Badie C., Polańska J.
    Academic press:
    International Journal of Applied Mathematics and Computer Science (rok: 2019, tom: 29(1), strony: 169-178), Wydawca: University of Zielona Góra
    Status:
    Published
    DOI:
    10.2478/amcs-2019-0013 - link to the publication
  24. Molecular Heterogeneity of Papillary Thyroid Cancer: Comparison of Primary Tumors and Synchronous Metastases in Regional Lymph Nodes by Mass Spectrometry Imaging
    Authors:
    Gawin M., Kurczyk A., Stobiecka E., Frątczak K., Polańska J., Pietrowska M., Widłak P.
    Academic press:
    Endocrine Pathology (rok: 2019, tom: 30, strony: 250-261), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s12022-019-09593-2 - link to the publication
  25. Systemic modulation of stress and immune parameters in patients treated for prostate adenocarcinoma by intensity-modulated radiation therapy or stereotactic ablative body radiotherapy
    Authors:
    Frey B., Mika J., Jelonek K., Cruz-Garcia L., Roelants C., Testard I., Cherradi N., Lumniczky K., Polozov S., Napieralska A., Widlak P., Gaipl U.S, Badie C., Polanska J., .Candéias S.M.
    Academic press:
    Strahlentherapie und Onkologie (rok: 2020, tom: 2020, strony: 45307), Wydawca: SPRINGER
    Status:
    Published
    DOI:
    10.1007/s00066-020-01637-5 - link to the publication
  26. Broadside: Distributed high-dimensional feature selection and interaction mining for classification, regression and survival analysis.
    Authors:
    Krol L., Tarnawski R., Polanska J.
    Academic press:
    Bioinformatics (rok: 2018, tom: bd, strony: bd), Wydawca: OXFORD UNIV PRESS
    Status:
    Submitted
    DOI:
    brak - link to the publication
  1. Adaptive training set selection for classification in mass spectrometry imaging data.
    Authors:
    Bednarczyk K., Mrukwa G., Polańska J.
    Conference:
    The 1st Summer School of the Malopolska Centre of Biotechnology (rok: 2018, ), Wydawca: Malopolska Centre of Biotechnology
    Data:
    konferencja 22-25.05.2018r.
    Status:
    Published
  2. Analiza korekcji linii bazowej w widmach z obrazowania molekularnego MSI
    Authors:
    Bednarczyk K., Polańska J.
    Conference:
    IV Śląskie Spotkania Naukowe (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 24-25.03.2017r.
    Status:
    Published
  3. Application of fully convolutional deep neural networks as an efficient technique for automated segmentation of gliomas
    Authors:
    Kocot S., Binczyk F.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  4. Assesement of the low-dose dependence of the acute response to irradiation of murine hippocampal tissue
    Authors:
    Piecyk R., Hladik D., Polańska J., Tapio S.
    Conference:
    22th Gliwice Scientific Meetings GSN 2018 (rok: 2018, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2018r.
    Status:
    Published
  5. Divisive iK-means algorithm as a tool for ROI selection in the search for MALDI-MSI based molecular signature of thyroid cancer
    Authors:
    Mrukwa G., Drazek G., Pietrowska M., Widlak P., Polanska J.
    Conference:
    Bio2016 Congress – Expanding beyond the limits" (rok: 2016, ), Wydawca: Acta Biochimica Polonica
    Data:
    konferencja 13-16.09.2016r.
    Status:
    Published
  6. Gaussian Mixture modelling in MSI-based search for molecularly homogenous regions in cancer tissue
    Authors:
    Polanska J., Mrukwa G., Drazek G., Krawczyk A., Chekan M., Pietrowska M., Widlak P.
    Conference:
    Imaging Mass Spectrometry Conference 2016 - OurCon IV (rok: 2016, ), Wydawca: MS Imaging
    Data:
    konferencja 17-21.10.2016
    Status:
    Published
  7. Investigation of molecular heterogeneity of head and neck cancer in MALDI-MSI preparations
    Authors:
    Mrukwa G., Pietrowska M., Widlak P., Polanska J.
    Conference:
    12th European Molecular Imaging Meeting EMIM 2017 (rok: 2017, ), Wydawca: ESMI–European Society for Molecular Imaging
    Data:
    konferencja 05-07.04.2017r.
    Status:
    Published
  8. Quantification of differences in brain tumor detection on multimodal MRI using deep neural network
    Authors:
    Leszczorz K., Dudzik W., Nalepa J., Polanska J.
    Conference:
    European Congress of Radiology 2020 (rok: 2020, ), Wydawca: uropean Society of Radiology (ESR)
    Data:
    konferencja 15-19.07.2020
    Status:
    Published
  9. SPECTRE – a web service for efficient tumor molecular heterogeneity assessment in MALDI - MSI data
    Authors:
    Mrukwa G., Kuchta D., Pustelnik S., Wolny M., Babiak D., Gallus M., Wilgierz W., Gamrat M., Lisak R., Polańska J.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  10. Spectre - an open source tool for comprehensive Mass Spectrometry Imaging data analysis
    Authors:
    Mrukwa G., Kuchta D., Babiak D., Pustelnik S., Gallus M., Gamrat M., Lisak R., Wolny M., Wilgierz W., Polańska J.
    Conference:
    13th European Molecular Imaging Meeting EMIM 2018 (rok: 2018, ), Wydawca: ESMI–European Society for Molecular Imaging
    Data:
    konferencja 20-23.03.2018r.
    Status:
    Published
  11. Assessing feature transformations for clustering of MALDI-MSI data
    Authors:
    Mrukwa G., Sykacek P., Drążek G., Pietrowska M., Chekan M., Widłak P., Polańska J.
    Conference:
    Imaging Mass Spectrometry Conference 2016 - OurCon IV (rok: 2016, ), Wydawca: MS Imaging
    Data:
    konferencja 17-21.10.2016
    Status:
    Published
  12. Automated detection of lymphocytes in whole slide histopathological images using MIMSEG2 approach
    Authors:
    Binczyk F., Marczyk M., Polanska J.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  13. Can Deep Learning be a tool for feature engineering? Yes, it can. Lung tumor CT imaging case study
    Authors:
    Binczyk F., Polanska J.
    Conference:
    12th Symposium of Polish Bioinformatics Society (rok: 2019, ), Wydawca: Polskie Towarzystwo Bioinformatyczne
    Data:
    konferencja 2019-09-19/21
    Status:
    Published
  14. Can unsupervised clustering of the mass spectrometry imaging data serve as a nearly lossless compression method?
    Authors:
    Pendziałek P., Polanska J.
    Conference:
    21-st Polish Conference on Biocybernetics and Biomedical Engineering (rok: 2019, ), Wydawca: University of Zielona Góra
    Data:
    konferencja 2019-09-25/27
    Status:
    Published
  15. Comparative classification study for pan-cancer mass spectrometry imaging data
    Authors:
    Frątczak K., Gawin M., Chekan M., Pietrowska M., Widłak P., Polańska J.
    Conference:
    13th Central and Eastern European Proteomic Conference (rok: 2019, ), Wydawca: Maria Sklodowska-Curie Institute - Oncology Center
    Data:
    konferencja 2019-09-23/25
    Status:
    Published
  16. Discrimination of normal oral mucosa from oral cancer by mass spectrometry imaging of proteins and lipids
    Authors:
    Gawin M., Bednarczyk K., Mykola Chekan M., Kurczyk A., Mrukwa G., Pietrowska M., Polanska J., Widlak P.
    Conference:
    Imaging Mass Spectrometry Conference 2018 - OurConVI (rok: 2018, ), Wydawca: MS Imaging
    Data:
    konferencja 1-14.11.2018r.
    Status:
    Published
  17. Genetic algorithm in training set selection for tumor segmentation problem
    Authors:
    Wilgierz W., Kuchta D., Mrukwa G., Chekan M., Widłak P., Pietrowska M., Polańska J.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  18. How Does Sample Preparation In MALDI-MSI Imaging Influence The Molecular Signature
    Authors:
    Bednarczyk K., Sammour D., Hopf C., Polańska J.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  19. Intra-tumor heterogeneity of thyroid cancer; comparison of primary tumor and its spread to regional lymph nodes by MALDI-MSI
    Authors:
    Gawin M., Ewa Stobiecka E., Bednarczyk K., Chekan M., Pietrowska M., Polańska J., Widlak P.
    Conference:
    Imaging Mass Spectrometry Conference 2017 - OurCon V (rok: 2017, ), Wydawca: MS Imaging
    Data:
    konferencja 25-28.09.2017r.
    Status:
    Published
  20. Is there any similarity in gene expression profile in response to radiation therapy, independently of the cancer type?
    Authors:
    Cruz-Garcia L., Kamuda M., Badie C., Polanska J.
    Conference:
    23rd Nuclear Medical Defence Conference ConRad2019 (rok: 2019, ), Wydawca: University of Ulm
    Data:
    konferencja 2019-05-13/16
    Status:
    Published
  21. Rough local reshaping for multimodal imagesco-registration using ellipsis' shape approximation
    Authors:
    Wolny M., Mrukwa G., Polańska J.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  22. Similarity and repeatability of molecular signatures for Pancancer MALDI-MSI data.
    Authors:
    Fratczak K. Polanska J.
    Conference:
    15th European Molecular Imaging Meeting EMIM 2020 (rok: 2020, ), Wydawca: ESMI–European Society for Molecular Imaging
    Data:
    konferencja 24-28.08.2020
    Status:
    Published
  23. Adaptive baseline correction algorithm for MALDI spectra
    Authors:
    Bednarczyk K., Gawin M., Pietrowska M., Widłak P., Polańska J.
    Conference:
    Imaging Mass Spectrometry Conference 2017 - OurCon V (rok: 2017, ), Wydawca: MS Imaging
    Data:
    konferencja 25-28.09.2017r.
    Status:
    Published
  24. Can the spatial distribution in MSI support the identification of the isotopic envelope? A.
    Authors:
    Glodek A., Gawin M., Chekan M., Pietrowska M., Łęski J., Polańska J.
    Conference:
    13th Central and Eastern European Proteomic Conference (rok: 2019, ), Wydawca: Maria Sklodowska-Curie Institute - Oncology Center
    Data:
    konferencja 2019-09-23/25
    Status:
    Published
  25. Heterogeneity-based training set selection for classification in mass spectrometry imaging data
    Authors:
    Mrukwa G., Frątczak K., Pietrowska M., Gawin M., Widłak P., Polańska J.
    Conference:
    Imaging Mass Spectrometry Conference 2018 - OurConVI (rok: 2018, ), Wydawca: MS Imaging
    Data:
    konferencja 1-14.11.2018r.
    Status:
    Published
  26. Machine Learning in the processing of proteomics data
    Authors:
    Polanska J.
    Conference:
    13th Central and Eastern European Proteomic Conference (rok: 2019, ), Wydawca: Maria Sklodowska-Curie Institute - Oncology Center
    Data:
    konferencja 2019-09-23/25
    Status:
    Published
  27. Proteomics validation analysis for ischemic heart disease in Mayak workers
    Authors:
    Papiez A., Azimzadeh O., Tapio S., Polanska J.
    Conference:
    13th Central and Eastern European Proteomic Conference (rok: 2019, ), Wydawca: Maria Sklodowska-Curie Institute - Oncology Center
    Data:
    konferencja 2019-09-23/25
    Status:
    Published
  28. Biological diversity or numeric artifact? MSI data clustering robustness.
    Authors:
    Mrukwa G., Fratczak K., Gawin M., Chekan M., Pietrowska M., Widlak P., Polanska J.
    Conference:
    14th European Molecular Imaging Meeting EMIM 2019 (rok: 2019, ), Wydawca: ESMI–European Society for Molecular Imaging
    Data:
    konferencja 2019-03-19/22
    Status:
    Published
  29. Detection of lymphocytes in stained whole tissue images by signal modelling approach
    Authors:
    Franciszek Bińczyk, Michał Marczyk, Joanna Polańska
    Conference:
    Computational Approaches in Precision Medicine (rok: 2017, ), Wydawca: BOKU University, Vienna
    Data:
    konferencja 27-28.07
    Status:
    Published
  30. Pan Cancer analysis of similarities and differences in hormonal cancers and environmental cancers using MALDI-MSI
    Authors:
    Frątczak K., Gawin M., Pietrowska M., Chekan M., Widłak P., Polanska J.
    Conference:
    14th European Molecular Imaging Meeting EMIM 2019 (rok: 2019, ), Wydawca: ESMI–European Society for Molecular Imaging
    Data:
    konferencja 2019-03-19/22
    Status:
    Published
  31. System klasyfikacji danych obrazowania molekularnego MALDI-MSI
    Authors:
    Paweł Pendziałek, Joanna Polańska
    Conference:
    Computational Oncology and Personalized Medicine COPM2021 Conference (rok: 2021, ), Wydawca: Politechnika Śląska
    Data:
    konferencja 21.04.2021r.
    Status:
    Published
  32. Detection of lymphocytes in stained whole tissue images by signal modelling approach
    Authors:
    Binczyk F., Marczyk M., Polanska J.
    Conference:
    Computational Approaches in Precision Medicine (rok: 2017, ), Wydawca: bd
    Data:
    konferencja 27-28.07.2017r.
    Status:
    Published
  33. Discrimination of normal oral mucosa from oral cancer by Mass Spectrometry Imaging of proteins and lipids
    Authors:
    Bednarczyk K, Gawin M., Chekan M., Kurczyk A., Mrukwa G., Monika Pietrowska M., Polanska J., Widlak P.
    Conference:
    22th Gliwice Scientific Meetings GSN 2018 (rok: 2018, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2018r.
    Status:
    Published
  34. Hybrid Clustering Method for Highly Dimensional Data
    Authors:
    Mrukwa G., Frątczak K., Polańska J.
    Conference:
    12th Symposium of Polish Bioinformatics Society (rok: 2019, ), Wydawca: Polskie Towarzystwo Bioinformatyczne
    Data:
    konferencja 2019-09-19/21
    Status:
    Published
  35. The application of deep convolutional neural networksin the automated diagnosis of early alzheimer's diseaseon magnetic resonance images
    Authors:
    Suwalska A., Binczyk F.
    Conference:
    21th Gliwice Scientific Meetings GSN 2017 (rok: 2017, ), Wydawca: Association for the Support of Cancer Research
    Data:
    konferencja 17-18.11.2017r.
    Status:
    Published
  1. Can an Integrative SNP Approach Substitute Standard Identification in Comprehensive Case/Control Analyses?
    Authors:
    Papiez A., Skrzypski M., Szymanowska-Narloch A., assem E., Maciejewska A., Pawlowski R., Dziadziuszko R., Jassem J., Rzyman W., Polanska J.
    Book:
    Advances in Intelligent Systems and Computing. ISBN:978-3-319-98701-9 (rok: 2018, tom: 803, strony: 123-130), Wydawca: Springer
    Status:
    Published
  2. Robustness of Pathway Enrichment Analysis to Transcriptome-Wide Gene Expression Platform
    Authors:
    Joanna Zyla J., Leszczorz K., Polanska J.
    Book:
    Advances in Intelligent Systems and Computing. ISBN: 978-3-030-54568-0 (rok: 2020, tom: 1240, strony: 176-185), Wydawca: Springer
    Status:
    Published
  3. Spatial Feature Selection For Finding Biomarkers Using Imaging Mass Spectrometry Data
    Authors:
    Marczyk M., Smejkal T.
    Book:
    Proceedings of the Twenty Third National Conference on APPLICATIONS OF MATHEMATICS IN BIOLOGY AND MEDICINE. ISBN: 978-83-932893-3-2 (rok: 2017, tom: 23, strony: 123-129), Wydawca: Politechnika Śląska
    Status:
    Published
  4. Reproducibility of Finding Enriched Gene Sets in Biological Data Analysis.
    Authors:
    Zyla J., Marczyk M., Polanska J.
    Book:
    Advances in Intelligent Systems and Computing. ISBN:978-3-319-60815-0 (rok: 2017, tom: 616, strony: 146-154), Wydawca: Springer
    Status:
    Published
  5. Improving Peak Detection by Gaussian Mixture Modeling of Mass Spectral Signal
    Authors:
    Marczyk M., Polanski A., Polanska J.
    Book:
    2017 3rd International Conference on Frontiers of Signal Processing ICFSP 2017. ISBN: 978-1-5386-1037-4 (rok: 2017, tom: nd, strony: 39-43), Wydawca: Institute of Electrical and Electronics Engineers
    Status:
    Published
  6. Mathematical modelling and effect size analysis in support of searching for the proteomic signature of radiotherapy toxicity
    Authors:
    Leszczorz K., Azimzadeh O., Tapio S., Atkinson M., Polańska J.
    Book:
    2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE). ISBN: 978-1-7281-4617-1 (rok: 2019, tom: nd, strony: 244-249), Wydawca: Institute of Electrical and Electronics Engineers
    Status:
    Published
  7. Breast Cancer Heterogeneity Investigation: Multiple k-Means Clustering Approach
    Authors:
    Tobiasz J., Hatzis C., Polanska J.
    Book:
    2019 IEEE 19th International Conference on Bioinformatics and Bioengineering (BIBE). ISBN: 978-1-7281-4617-1 (rok: 2019, tom: nd, strony: 410-414), Wydawca: Institute of Electrical and Electronics Engineers
    Status:
    Published

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