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Information of the project and the call

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Rozwój i zastosowanie narzędzia bioinformatycznego do oceny jakości modeli struktur RNA

2014/12/T/NZ2/00501

Keywords:

Descriptors:

  • NZ2_7: Bioinformatics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Instytut Biochemii i Biofizyki PAN

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Marcin Magnus 

Number of co-investigators in the project: 2

Call: ETIUDA 2 - announced on 2013-12-16

Amount awarded: 98 540 PLN

Project start date (Y-m-d): 2014-10-01

Project end date (Y-m-d): 2015-09-30

Project duration:: 12 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (2)
  • Book publications / chapters in book publications (2)
  1. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme.
    Authors:
    Z. Miao, R. W. Adamiak, M. Antczak, R. T. Batey, A. J. Becka, M. Biesiada, M. J. Boniecki, J. M. Bujnicki, S.-J. Chen, C. Y. Cheng, F.-C. Chou, A. R. Ferré-D'Amaré, R. Das, W. K. Dawson, F. Ding, N. V. Dokholyan, S. Dunin-Horkawicz, C. Geniesse, K. Kappel, W. Kladwang, A. Krokhotin, G. E. Łach, F. Major, T. H. Mann, M. Magnus, K. Pachulska-Wieczorek, D. J. Patel, J. A. Piccirilli, M. Popenda, K. J. Purzycka, A. Ren, G. M. Rice, J. Santalucia, J. Sarzynska, M. Szachniuk, A. Tandon, J. J. Trausch, S. Tian, J. Wang, K. M. Weeks, B. Williams, Y. Xiao, X. Xu, D. Zhang, T. Zok, and E. Westhof
    Academic press:
    RNA (rok: 2017, tom: 23, strony: 655–672), Wydawca: RNA Society, Cold Spring Harbor Laboratory Press
    Status:
    Published
    DOI:
    10.1261/rna.060368.116 - link to the publication
  2. SimRNAweb: a web server for RNA 3D structure modeling with optional restraints
    Authors:
    M. Magnus, M. J. Boniecki, W. K. Dawson, and J. M. Bujnicki
    Academic press:
    Nucleic Acids Research (rok: 2016, tom: 44, strony: W315–W319), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gkw279 - link to the publication
  1. Modeling of Protein-RNA Complex Structures Using Computational Docking Methods
    Authors:
    B. Madan, J. M. Kasprzak, I. Tuszyńska, M. Magnus, K. Szczepaniak, W. K. Dawson, and J. M. Bujnicki
    Book:
    Computational Design of Ligand Binding Proteins. Methods in Molecular Biology (rok: 2016, tom: 1414, strony: 353-372), Wydawca: Humana Press, New York, NY
    Status:
    Published
    DOI:
    link to the publication
  2. RNA 3D Structure Modeling by Combination of Template-Based Method ModeRNA, Template-Free Folding with SimRNA, and Refinement with QRNAS.
    Authors:
    P. Piatkowski, J. M. Kasprzak, D. Kumar, M. Magnus, G. Chojnowski, and J. M. Bujnicki
    Book:
    RNA Structure Determination. Methods in Molecular Biology (rok: 2016, tom: 1490, strony: 217–235), Wydawca: Humana Press, New York, NY
    Status:
    Published

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