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Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Development of comparison methodology, modern validation metrics and modern visualization techniques for biclustering algorithm

2013/11/N/ST6/03204

Keywords:

biclustering visuaization metrics data mining pattern recognition ensemble

Descriptors:

  • ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • ST6_12: Scientific computing, simulation and modelling tools

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Akademia Górniczo-Hutnicza im. Stanisława Staszica w Krakowie, Wydział Elektrotechniki, Automatyki, Informatyki i Inżynierii Biomedycznej

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Patryk Orzechowski 

Number of co-investigators in the project: 2

Call: PRELUDIUM 6 - announced on 2013-09-16

Amount awarded: 99 750 PLN

Project start date (Y-m-d): 2014-07-29

Project end date (Y-m-d): 2017-01-28

Project duration:: 30 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Drukarka kolorowa (710 PLN)
  2. Koprocesor do obliczeń równoległych na potrzeby algorytmu typu ensemble i skalowania wielowymiarowego (lub metody pokrewnej) (5 400 PLN)
  3. Zestaw komputerowy wspierający koprocesor (12 790 PLN)

Information in the final report

  • Publication in academic press/journals (3)
  • Articles in post-conference publications (3)
  • Book publications / chapters in book publications (1)
  1. Effective biclustering on GPU - capabilities and constraints
    Authors:
    Patryk Orzechowski, Krzysztof Boryczko
    Academic press:
    Przegląd Elektrotechniczny (rok: 2015, tom: R. 91 NR 8/2015, strony: 131-134), Wydawca: SIGMA-NOT
    Status:
    Published
    DOI:
    10.15199/48.2015.08.31 - link to the publication
  2. Rough assessment of GPU capabilities for parallel PCC-based biclustering method applied to microarray datasets
    Authors:
    Patryk Orzechowski, Krzysztof Boryczko
    Academic press:
    Bio-Algorithms and Med-Systems (BAMS) (rok: 2015, tom: Vol. 11,Issue 4, strony: 243–248), Wydawca: De Gruyter
    Status:
    Published
    DOI:
    10.1515/bams-2015-0033 - link to the publication
  3. PROPAGATION-BASED BICLUSTERING ALGORITHM FOR EXTRACTING INCLUSION-MAXIMAL MOTIFS
    Authors:
    Partyk Orzechowski, Krzysztof Boryczko
    Academic press:
    Computing and Informatics (rok: 2016, tom: 35, strony: 391-410), Wydawca: SLOVAK ACADEMY OF SCIENCES
    Status:
    Published
    DOI:
    brak - link to the publication
  1. Hybrid biclustering algorithms for data mining
    Authors:
    Patryk Orzechowski, Krzysztof Boryczko
    Conference:
    Evolutionary Computation, Machine Learning and Data Mining in Computational Biology (EvoBIO 21016) (rok: 2016, ), Wydawca: Springer International Publishing Switzerland 2016
    Data:
    konferencja 29.03-1.04.2016
    Status:
    Published
  2. Text mining with hybrid biclustering algorithms
    Authors:
    Patryk Orzechowski, Krzysztof Boryczko
    Conference:
    15th International Conference on Artificial Intelligence and Soft Computing Web System (ICAISC 2016) (rok: 2016, ), Wydawca: Springer LNCS
    Data:
    konferencja 12-16.06.2016
    Status:
    Published
    DOI:
    link to the publication
  3. QtBiVis: a software toolbox for visual analysis of biclustering experiment
    Authors:
    Artur Pańszczyk, Patryk Orzechowski
    Conference:
    Federated Conference on Computer Science and Information Systems (rok: 2016, ), Wydawca: ACSIS / IEEE
    Data:
    konferencja 11-14 września 2016
    Status:
    Published
    DOI:
    link to the publication
  1. Hybrid biclustering algorithms
    Authors:
    Patryk Orzechowski
    Book:
    Hybrid biclustering algorithms (rok: 2016, tom: 1, strony: 177), Wydawca: Wydawnictwo AGH
    Status:
    Published
    DOI:
    link to the publication

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