Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Comprehensive mammalian enhancer annotation from sequence and functional data

2012/05/B/NZ2/00567

Keywords:

enhancer histone modifications cooperative transcription factor binding enhanceosome

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ2_8: Computational biology

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Jerzy Tiuryn 

Number of co-investigators in the project: 6

Call: OPUS 3 - announced on 2012-03-15

Amount awarded: 565 000 PLN

Project start date (Y-m-d): 2013-02-05

Project end date (Y-m-d): 2017-02-04

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. serwer obliczeniowy (100 000 PLN)
  2. Komputer PC lub laptop (2 szt.) (10 000 PLN)

Information in the final report

  • Publication in academic press/journals (5)
  1. FastBill: An Improved Tool for Prediction of Cis-Regulatory Modules
    Authors:
    Bartosz Wilczyński, Jerzy Tiuryn
    Academic press:
    JOURNAL OF COMPUTATIONAL BIOLOGY (rok: 2016, tom: 23, strony: 45298), Wydawca: Mary Ann Liebert, Inc.
    Status:
    Published
    DOI:
    10.1089/cmb.2016.0108 - link to the publication
  2. Romulus: robust multi-state identification of transcription factor binding sites from DNase-seq data
    Authors:
    Jankowski A, Tiuryn J, Prabhakar S.
    Academic press:
    Bionformatics (rok: 2016, tom: 32 (16), strony: 2419-2426), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btw209 - link to the publication
  3. Active enhancer position can be accrately predicted from chromatin marks and collective sequence motif data
    Authors:
    A. Podsiadło, M. Wrzesień, W. Paja, W. Rudnicki, B. Wilczyński
    Academic press:
    BMC Systems Biology (rok: 2013, tom: 7 (Suppl. 6), strony: S16), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/1752-0509-7-S6-S16 - link to the publication
  4. Enhanceosome transcription factors preferentially dimerize with high mobility group proteins
    Authors:
    Aleksander Jankowski, Paulina Obara, Utsav Mathur, Jerzy Tiuryn
    Academic press:
    BMC Systems Biology (rok: 2016, tom: 10, strony: 3), Wydawca: BioMedCentral
    Status:
    Published
    DOI:
    10.1186/s12918-016-0258-3 - link to the publication
  5. TACO: a general-purpose tool for predicting cell-type–specific transcription factor dimers
    Authors:
    Aleksander Jankowski, Shyam Prabhakar, and Jerzy Tiuryn
    Academic press:
    BMC Genomics (rok: 2014, tom: 15, strony: 208), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/1471-2164-15-208 - link to the publication

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