Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Compression and data mining algorithms for genomic data and their implications for comparative genomics

2011/01/B/ST6/06868

Keywords:

compression searching through genomic data compartive genomics retrogenes miRNA

Descriptors:

  • ST6_9: Human computer interaction, speech recognition and synthesis, natural language processing

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

woj. śląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Andrzej Polański 

Number of co-investigators in the project: 10

Call: OPUS 1 - announced on 2011-03-15

Amount awarded: 750 000 PLN

Project start date (Y-m-d): 2011-12-27

Project end date (Y-m-d): 2015-06-26

Project duration:: 42 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Macierz dyskowa (20 000 PLN)
  2. Stacje robocze o raz komputery przenośne (3 szt.) (30 000 PLN)
  3. Wysokowydajne karty graficzne (2 szt.) (10 000 PLN)

Information in the final report

  • Publication in academic press/journals (7)
  • Articles in post-conference publications (7)
  • Book publications / chapters in book publications (5)
  1. Modeling of Imaging Mass Spectrometry Data and Testing by Permutation for Biomarkers Discovery in Tissues
    Authors:
    Michal Marczyk, Grzegorz Drazek, Monika Pietrowska, Piotr Widlak, Joanna Polanska, Andrzej Polanski
    Academic press:
    Procedia Computer Science (rok: 2015, tom: 51, strony: 693-702), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.procs.2015.05.186 - link to the publication
  2. Disk-based k-mer counting on a PC
    Authors:
    Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Szymon Grabowski
    Academic press:
    BMC Bioinformatics (rok: 2013, tom: 14, strony: 160), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/1471-2105-14-160 - link to the publication
  3. Genome compression: a novel approach for large collections
    Authors:
    Sebastian Deorowicz, Agnieszka Danek, Szymon Grabowski
    Academic press:
    Bioinformatics (rok: 2013, tom: 29, strony: 2572-2578), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btt460 - link to the publication
  4. HuntMi: an efficient and taxon-specific approach in pre-miRNA identification
    Authors:
    Adam Gudyś, Michał Wojciech Szcześniak, Marek Sikora, Izabela Makałowska
    Academic press:
    BMC Bioinformatics (rok: 2013, tom: 14, strony: 83), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/1471-2105-14-83 - link to the publication
  5. Signal Partitioning Algorithm for Highly Efficient Gaussian Mixture Modeling in Mass Spectrometry
    Authors:
    Andrzej Polanski, Michal Marczyk, Monika Pietrowska, Piotr Widlak, Joanna Polanska
    Academic press:
    PLOS ONE (rok: 2015, tom: 10, strony: e0134256), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0134256 - link to the publication
  6. Adaptive filtering of microarray gene expression data based on Gaussian mixture decomposition
    Authors:
    Michal Marczyk, Roman Jaksik, Andrzej Polański, Joanna Polańska
    Academic press:
    BMC Bioinformatics (rok: 2013, tom: 14, strony: 101), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/1471-2105-14-101 - link to the publication
  7. Inter-population differences in retrogenes loss and expression in human
    Authors:
    Michał Kabza, Magdalena Regina Kubiak, Agnieszka Danek, Wojciech Rosikiewicz, Sebastian Deorowicz, Andrzej Polański, Izabela Makalowska
    Academic press:
    PLOS Genetics , Wydawca: Public Library of Science
    Status:
    Submitted
    DOI:
    brak - link to the publication

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