Establishing a universal pangenome model
2022/47/B/ST6/03154
Keywords
Descriptors
- ST6_013: Bioinformatyka, bioobliczenia, obliczenia DNA i molekularne
- NZ2_008: Biologia obliczeniowa
- ST1_014: Matematyka dyskretna i kombinatoryka
Panel
ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution
Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki
Voivodeship: mazowieckie
Principal investigator (from the host institution)
Number of co-investigators in the project: 8
Call
OPUS 24 – announced on 2022-07-15
- Amount awarded
- 488 000 PLN
- Project start date
- 2023-07-06
- Project end date
- 2027-07-05
- Project duration
- 48 months (the same as in the proposal)
- Project status
- Pending project
Project description
Download the project description in a pdf file
Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Information in the final report
Publication in academic press/journals (1)
-
AlfaPang: alignment free algorithm for pangenome graph construction
- Authors:
- Adam Cicherski, Anna Lisiecka, Norbert Dojer
- Academic press:
- Algorithms for Molecular Biology (year: 2025, volume: 20, pages: 7), Publisher: BioMed Central
- Status:
- Published
- DOI:
- 10.1186/s13015-025-00277-7 – link to the publication
Articles in post-conference publications (2)
-
AlfaPang: Alignment Free Algorithm for Pangenome Graph Construction
- Authors:
- Adam Cicherski, Anna Lisiecka, Norbert Dojer
- Conference:
- 24th International Workshop on Algorithms in Bioinformatics (WABI 2024) (year: 2024, volume: WABI 2024, pages: 23:1-23:18), Publisher: Schloss Dagstuhl – Leibniz-Zentrum für Informatik
- Date:
- conference 2-4.09.2024.
- Status:
- Published
- DOI:
- 10.4230/LIPIcs.WABI.2024.23 – link to the publication
-
From de Bruijn graphs to variation graphs – relationships between pangenome models
- Authors:
- Adam Cicherski, Norbert Dojer
- Conference:
- String Processing and Information Retrieval. SPIRE 2023. (year: 2023, volume: SPIRE 2023, pages: 114-128), Publisher: Springer Nature
- Date:
- conference 26-28.09.2023
- Status:
- Published
- DOI:
- 10.1007/978-3-031-43980-3_10 – link to the publication