Projects funded by the NCN
Establishing a universal pangenome model
2022/47/B/ST6/03154
Keywords:
pangenome DNA sequence graph de Bruijn graph whole genome alignment DNA sequencing algorithm
Descriptors:
- ST6_013:
- NZ2_008:
- ST1_014:
Panel:
ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution :
Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki
woj. mazowieckie
Principal investigator (from the host institution):
Number of co-investigators in the project: 8
Call: OPUS 24 - announced on 2022-07-15
Amount awarded: 488 000 PLN
Project start date (Y-m-d): 2023-07-06
Project end date (Y-m-d): 2026-07-05
Project duration:: 36 months (the same as in the proposal)
Project status: Pending project
Project description
Download the project description in a pdf file
Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Information in the final report
- Articles in post-conference publications (2)
- From de Bruijn graphs to variation graphs – relationships between pangenome modelsAuthors:Adam Cicherski, Norbert DojerConference:String Processing and Information Retrieval. SPIRE 2023. (rok: 2023, tom: SPIRE 2023, strony: 114-128), Wydawca: Springer NatureData:konferencja 26-28.09.2023Status:PublishedDOI:10.1007/978-3-031-43980-3_10 - link to the publication
- AlfaPang: Alignment Free Algorithm for Pangenome Graph ConstructionAuthors:Adam Cicherski, Anna Lisiecka, Norbert DojerConference:24th International Workshop on Algorithms in Bioinformatics (WABI 2024) (rok: 2024, tom: WABI 2024, strony: 23:1-23:18), Wydawca: Schloss Dagstuhl – Leibniz-Zentrum für InformatikData:konferencja 2-4.09.2024.Status:PublishedDOI:10.4230/LIPIcs.WABI.2024.23 - link to the publication