Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Extended microbiome characterization by the exploitation of the microbial intra-community synergies -- towards better understanding of the Exposome.

2020/38/E/NZ2/00598

Keywords:

microbiome exposome bioinformatics machine learning

Descriptors:

  • NZ2_007:
  • ST6_013:
  • NZ2_002:

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Jagielloński, Małopolskie Centrum Biotechnologii Uniwersytetu Jagiellońskiego

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr hab. Paweł Piotr Łabaj 

Number of co-investigators in the project: 9

Call: SONATA BIS 10 - announced on 2020-07-29

Amount awarded: 2 784 522 PLN

Project start date (Y-m-d): 2021-05-05

Project end date (Y-m-d): 2026-05-04

Project duration:: 60 months (the same as in the proposal)

Project status: Project completed

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (8)
  1. Adaptation to space conditions of novel bacterial species isolated from the International Space Station revealed by functional gene annotations and comparative genome analysis
    Authors:
    Lukasz M. Szydlowski, Alper A. Bulbul, Anna C. Simpson, Deniz E. Kaya, Nitin K. Singh, Ugur O. Sezerman, Paweł P. Łabaj, Tomasz Kosciolek & Kasthuri Venkateswaran
    Academic press:
    Microbiome (rok: 2024, tom: 12, strony: 190), Wydawca: BioMed Central Ltd
    Status:
    Published
    DOI:
    10.1186/s40168-024-01916-8 - link to the publication
  2. HCS—hierarchical algorithm for simulation of omics datasets
    Authors:
    Piotr Stomma, Witold R Rudnicki
    Academic press:
    Bioinformatics (rok: 2024, tom: 40, Issue Supplement 2, strony: ii98–ii104), Wydawca: OUP
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btae392 - link to the publication
  3. Unique Athletic Gut Microbiomes and Their Role in Sports Performance: A Narrative Review
    Authors:
    Kinga Humińska-Lisowska, Kinga Zielińska, Paweł P Łabaj
    Academic press:
    Journal of Human Kinetics (rok: 2025, tom: 99, strony: 79-97), Wydawca: Termedia Publishing House Ltd.
    Status:
    Published
    DOI:
    10.5114/jhk/202642 - link to the publication
  4. High-altitude mountaineering induces adaptive gut microbiome shifts associated with dietary intake and performance markers
    Authors:
    Ewa Karpęcka-Gałka, Kinga Zielińska, Barbara Frączek, Paweł P. Łabaj, Tomasz Kościółek & Kinga Humińska-Lisowska
    Academic press:
    Scientific Reports (rok: 2025, tom: 15, strony: 37529), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1038/s41598-025-22848-9 - link to the publication
  5. Healthy microbiome—moving towards functional interpretation
    Authors:
    Kinga Zielińska , Klas I Udekwu , Witold Rudnicki , Alina Frolova , Paweł P Łabaj
    Academic press:
    GigaScience (rok: 2025, tom: 14, strony: 1–14), Wydawca: OUP
    Status:
    Published
    DOI:
    10.1093/gigascience/giaf015 - link to the publication
  6. Antimicrobial resistance in diverse urban microbiomes: uncovering patterns and predictive markers
    Authors:
    Rodolfo Brizola Toscan, Wojciech Lesiński, Piotr Stomma, Balakrishnan Subramanian, Paweł P. Łabaj, Witold R. Rudnicki
    Academic press:
    Frontiers in Genetics (rok: 2025, tom: 16, strony: 1460508), Wydawca: Frontiers
    Status:
    Published
    DOI:
    10.3389/fgene.2025.1460508 - link to the publication
  7. Analysis of metagenomic data
    Authors:
    Liu, S., Rodriguez, J.S., Munteanu, V. et al.
    Academic press:
    Nature Reviews Methods Primers (rok: 2025, tom: 5, strony: 5), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1038/s43586-024-00376-6 - link to the publication
  8. Gut microbiome dynamics and predictive value in hospitalized COVID-19 patients: a comparative analysis of shallow and deep shotgun sequencing
    Authors:
    Kopera K, Gromowski T, Wydmański W, Skonieczna-Żydecka K, Muszyńska A, Zielińska K, Wierzbicka-Woś A, Kaczmarczyk M, Kadaj-Lipka R, Cembrowska-Lech D, Januszkiewicz K, Kotfis K, Witkiewicz W, Nalewajska M, Feret W, Marlicz W, Łoniewski I, Łabaj PP, Rydzewska G and Kosciolek T
    Academic press:
    Frontier in Microbiology (rok: 2024, tom: 15, strony: 1342749), Wydawca: Frontiers
    Status:
    Published
    DOI:
    10.3389/fmicb.2024.1342749 - link to the publication

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