Biologically Meaningful Inference of Phylogenetic Networks
2019/33/B/ST6/00737
Keywords
Descriptors
- ST6_012: Obliczenia naukowe, narzędzia modelowania i symulacji
- ST6_013: Bioinformatyka, bioobliczenia, obliczenia DNA i molekularne
- ST6_006: Algorytmika, algorytmy równoległe, rozproszone i sieciowe, algorytmiczna teoria gier
Panel
ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution
Uniwersytet Warszawski
Voivodeship: mazowieckie
Principal investigator (from the host institution)
Number of co-investigators in the project: 9
Call
OPUS 17 – announced on 2019-03-15
- Amount awarded
- 888 300 PLN
- Project start date
- 2020-02-06
- Project end date
- 2025-02-05
- Project duration
- 60 months (the same as in the proposal)
- Project status
- Project settled
Project description
Download the project description in a pdf file
Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Information in the final report
Publication in academic press/journals (6)
-
Phylogenetic network-assisted rooting of unrooted gene trees
- Authors:
- Jerzy Tiuryn, Natalia Rutecka & Paweł Górecki
- Academic press:
- Journal of Combinatorial Optimization (year: 2024, volume: 47, pages: 46049), Publisher: Springer
- Status:
- Published
- DOI:
- 10.1007/s10878-024-01181-3 – link to the publication
-
The interkingdom horizontal gene transfer in 44 early diverging fungi boosted their metabolic, adaptive, and immune capabilities
- Authors:
- Michał Aleksander Ciach, Julia Pawłowska, Paweł Górecki, Anna Muszewska
- Academic press:
- Evolution Letters (year: 2024, volume: qrae009, pages: 46035), Publisher: Oxford Academic Press
- Status:
- Published
- DOI:
- 10.1093/evlett/qrae009 – link to the publication
-
Rooting Gene Trees via Phylogenetic Networks
- Authors:
- Jerzy Tiuryn, Natalia Rutecka, Paweł Górecki
- Academic press:
- Lecture Notes in Computer Science (year: 2022, volume: 13595, pages: 419–431), Publisher: Springer
- Status:
- Published
- DOI:
- 10.1007/978-3-031-22105-7_37 – link to the publication
-
Conflict Resolution Algorithms for Deep Coalescence Phylogenetic Networks
- Authors:
- Wawerka, Marcin ; Dąbkowski, Dawid ; Rutecka, Natalia ; Mykowiecka, Agnieszka ; Górecki, Paweł
- Academic press:
- Leibniz International Proceedings in Informatics (LIPIcs) (year: 2021, volume: 201, pages: 17:1--17:21), Publisher: Leibniz International Proceedings in Informatics (LIPIcs)
- Status:
- Published
- DOI:
- 10.4230/LIPIcs.WABI.2021.17 – link to the publication
-
Embedding Gene Trees into Phylogenetic Networks by Conflict Resolution Algorithms
- Authors:
- Marcin Wawerka, Dawid Dąbkowski, Natalia Rutecka, Agnieszka Mykowiecka, Paweł Górecki
- Academic press:
- Algorithms for Molecular Biology (year: 2022, volume: 17, pages: --), Publisher: BioMed Central
- Status:
- Published
- DOI:
- 10.1186/s13015-022-00218-8 – link to the publication
-
Computing Generalized Cophenetic Distances Under All Lp Norms: A Near-Linear Time Algorithmic Framework
- Authors:
- Paweł Górecki, Alexey Markin, Sriram Vijendran, Oliver Eulenstein
- Status:
- Accepted for publication
Articles in post-conference publications (1)
-
Robinson-Foulds distance between phylogenetic networks and gene trees
- Authors:
- Natalia Rutecka, Agnieszka Mykowiecka, Jarosław Paszek, Paweł Górecki
- Conference:
- BCB '24: Proceedings of the 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics (year: 2024, volume: The 15th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics, pages: 46032), Publisher: Association for Computing Machinery
- Date:
- conference 2024
- Status:
- Published
- DOI:
- 10.1145/3698587.3701349 – link to the publication