Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Prediction of hosts from metagenomic viral sequences using alignment-free algorithms

2018/31/D/NZ2/00108

Keywords:

virus host metagenomics bioinformatics bacteria genome sequence

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ2_8: Computational biology
  • NZ2_2: Genomics, transcriptomics, epigenomics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet im. Adama Mickiewicza w Poznaniu, Wydział Biologii

woj. wielkopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Andrzej Zieleziński 

Number of co-investigators in the project: 3

Call: SONATA 14 - announced on 2018-09-14

Amount awarded: 545 820 PLN

Project start date (Y-m-d): 2019-06-21

Project end date (Y-m-d): 2023-06-20

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Serwer plików typu NAS (60 000 PLN)
  2. Dysk twardy wewnętrzy.
  3. Komputer przenośny typu MacBook Pro z oprogramowaniem (15 000 PLN)
  4. Wysoko wydajna stacja robocza (2 szt.) (70 000 PLN)

Information in the final report

  • Publication in academic press/journals (7)
  1. Taxonomy-aware, sequence similarity ranking reliably predicts phage–host relationships
    Authors:
    Andrzej Zielezinski, Jakub Barylski, Wojciech M. Karlowski
    Academic press:
    BMC Biology (rok: 2021, tom: 19, strony: 45305), Wydawca: BioMed Central (UK)
    Status:
    Published
    DOI:
    10.1186/s12915-021-01146-6 - link to the publication
  2. Massive annotation of bacterial L-asparaginases reveals their puzzling distribution and frequent gene transfer events
    Authors:
    Andrzej Zielezinski, Joanna I. Loch, Wojciech M. Karlowski, Mariusz Jaskolski
    Academic press:
    Scientific Reports (rok: 2022, tom: 12, strony: 45303), Wydawca: Nature Portfolio
    Status:
    Published
    DOI:
    10.1038/s41598-022-19689-1 - link to the publication
  3. PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences
    Authors:
    Andrzej Zielezinski, Sebastian Deorowicz, Adam Gudyś
    Academic press:
    Bioinformatics (rok: 2021, tom: 38, strony: 1447-1449), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btab837 - link to the publication
  4. Ultraconserved bacteriophage genome sequence identified in 1300-year-old human palaeofaeces
    Authors:
    Rozwalak P, Barylski J, Wijesekara Y, Bas DE, Zielezinski A
    Academic press:
    Nature Communications , Wydawca: Nature Portfolio
    Status:
    Submitted
    DOI:
    brak - link to the publication
  5. Benchmarking of alignment-free sequence comparison methods
    Authors:
    Andrzej Zielezinski, Hani Z. Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie Röhling, Jae Jin Choi, Michael S. Waterman, Matteo Comin, Sung-Hou Kim, Susana Vinga, Jonas S. Almeida, Cheong Xin Chan, Benjamin T. James, Fengzhu Sun, Burkhard Morgenstern, Wojciech M. Karlowski
    Academic press:
    Genome Biology (rok: 2019, tom: 20, strony: 45309), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s13059-019-1755-7 - link to the publication
  6. Daily Reports on Phage-Host Interactions
    Authors:
    Kamil Albrycht, Adam A. Rynkiewicz, Michal Harasymczuk, Jakub Barylski, Andrzej Zielezinski
    Academic press:
    Frontiers in Microbiology (rok: 2022, tom: 13, strony: 45297), Wydawca: Frontiers Media S.A.
    Status:
    Published
    DOI:
    10.3389/fmicb.2022.946070 - link to the publication
  7. RaFAH: Host prediction for viruses of Bacteria and Archaea based on protein content
    Authors:
    Felipe Coutinho, Asier Zaragoza-Solas, Mario López-Pérez, Jakub Barylski, Andrzej Zielezinski, Bas E. Dutilh, Robert Edwards, F Rodriguez-Valera
    Academic press:
    Patterns (rok: 2021, tom: 2, strony: 45299), Wydawca: Cell Press
    Status:
    Published
    DOI:
    10.1016/j.patter.2021.100274 - link to the publication

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