Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Prediction and evolution of signal sequences in organelles of endosymbiotic origin.

2018/31/N/NZ2/01338

Keywords:

presequences endosymbiosis machine learning pladtids targeting signals antimicrobial peptides

Descriptors:

  • NZ2_3: Proteomics
  • NZ2_7: Bioinformatics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Wrocławski, Wydział Biotechnologii

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Katarzyna Sidorczuk 

Number of co-investigators in the project: 2

Call: PRELUDIUM 16 - announced on 2018-09-14

Amount awarded: 198 600 PLN

Project start date (Y-m-d): 2019-07-16

Project end date (Y-m-d): 2023-07-15

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Przenośny komputer osobisty (9 000 PLN)
  2. Monitor komputerowy (2 000 PLN)

Information in the final report

  • Publication in academic press/journals (6)
  • Book publications / chapters in book publications (1)
  1. Characterization of signal and transit peptides based on motif composition and taxon-specific patterns
    Authors:
    Sidorczuk, Katarzyna; Mackiewicz, Paweł; Pietluch, Filip; Gagat, Przemysław
    Academic press:
    Scientific Reports (rok: 2023, tom: 13, strony: 15751), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41598-023-42987-1 - link to the publication
  2. Prediction of protein subplastid localization and origin with PlastoGram
    Authors:
    Sidorczuk, Katarzyna; Gagat, Przemysław; Kała, Jakub; Nielsen, Henrik; Pietluch, Filip; Mackiewicz, Paweł; Burdukiewicz, Michał
    Academic press:
    Scientific Reports (rok: 2023, tom: 13, strony: 8365), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41598-023-35296-0 - link to the publication
  3. The dynamic landscape of peptide activity prediction
    Authors:
    Bárcenas, Oriol; Pintado-Grima, Carlos; Sidorczuk, Katarzyna; Teufel, Felix; Nielsen, Henrik; Ventura, Salvador; Burdukiewicz, Michał
    Academic press:
    Computational and Structural Biotechnology Journal (rok: 2022, tom: 20, strony: 6526-6533), Wydawca: ELSEVIER
    Status:
    Published
    DOI:
    10.1016/j.csbj.2022.11.043 - link to the publication
  4. Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram
    Authors:
    Burdukiewicz, Michał; Sidorczuk, Katarzyna; Rafacz, Dominik; Pietluch, Filip; Chilimoniuk, Jarosław; Rödiger, Stefan; Gagat, Przemysław.
    Academic press:
    International Journal of Molecular Sciences (rok: 2020, tom: 21(12), strony: 4310), Wydawca: Multidisciplinary Digital Publishing Institute
    Status:
    Published
    DOI:
    10.3390/ijms21124310 - link to the publication
  5. Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data
    Authors:
    Sidorczuk, Katarzyna; Gagat, Przemysław; Pietluch, Filip; Kała, Jakub; Rafacz, Dominik; Bąkała, Laura; Słowik, Jadwiga; Kolenda, Rafał; Rödiger, Stefan; Fingerhut, Legana C H W; Cooke, Ira R; Mackiewicz, Paweł; Burdukiewicz, Michał
    Academic press:
    Briefings in Bioinformatics (rok: 2022, tom: 23, strony: bbac343), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bib/bbac343 - link to the publication
  6. CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides
    Authors:
    Burdukiewicz, Michał; Sidorczuk, Katarzyna; Rafacz, Dominik; Pietluch, Filip; Bąkała, Mateusz; Słowik, Jadwiga; Gagat, Przemysław
    Academic press:
    Pharmaceutics (rok: 2020, tom: 12(11), strony: 1045), Wydawca: Multidisciplinary Digital Publishing Institute
    Status:
    Published
    DOI:
    10.3390/pharmaceutics12111045 - link to the publication
  1. The Photosynthetic Adventure of Paulinella Spp.
    Authors:
    Gagat, Przemysław; Sidorczuk, Katarzyna; Pietluch, Filip; Mackiewicz, Paweł
    Book:
    Symbiosis: Cellular, Molecular, Medical and Evolutionary Aspects (rok: 2020, tom: 69, strony: 353-386), Wydawca: Springer
    Status:
    Published

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