Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Development and application of interacting molecules prediction methods based on sequence coevolution.

2018/29/N/NZ2/02897

Keywords:

Proteins RNA sequence analysis Direct Coupling Analysis DCA paralogues interaction

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • NZ2_9: Systems biology
  • NZ2_3: Proteomics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Warszawski, Centrum Nowych Technologii Uniwersytetu Warszawskiego

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Aleksandra Jarmolińska 

Number of co-investigators in the project: 2

Call: PRELUDIUM 15 - announced on 2018-03-15

Amount awarded: 138 100 PLN

Project start date (Y-m-d): 2019-03-06

Project end date (Y-m-d): 2021-03-05

Project duration:: 24 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Komputer przenośny (6 000 PLN)
  2. Serwer (18 771 PLN)
  3. Serwer obliczeniowy (25 000 PLN)

Information in the final report

  • Publication in academic press/journals (2)
  1. Slipknotted and unknotted monovalent cation-proton antiporters evolved from a common ancestor
    Authors:
    Vasilina Zayats,Agata P. Perlinska,Aleksandra I. Jarmolinska,Borys Jastrzebski,Stanislaw Dunin-Horkawicz,Joanna I. Sulkowska
    Academic press:
    Plos Computational Biology (rok: 2021, tom: 17, strony: 45311), Wydawca: Plos
    Status:
    Published
    DOI:
    10.1371/journal.pcbi.1009502 - link to the publication
  2. Knot_pull—python package for biopolymer smoothing and knot detection
    Authors:
    Aleksandra I Jarmolinska, Anna Gambin, Joanna I Sulkowska
    Academic press:
    Bioinformatics (rok: 2020, tom: 36, strony: 953-955), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btz644 - link to the publication

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