Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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A comprehensive plastid database with a toolkit for phylogenetic and presequence analyses

2017/26/D/NZ8/00444

Keywords:

chromalveolates database endosymbiosis evolution plastid Paulinella targeting signal

Descriptors:

  • NZ8_1: Evolutionary biology
  • NZ8_10: Taxonomy and phylogenetic
  • NZ8_14: Other related subjects

Panel:

NZ8 - Evolutionary and environmental biology: evolution, ecology, population biology, biodiversity, biogeography

Host institution :

Uniwersytet Wrocławski, Wydział Biotechnologii

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Przemysław Gagat 

Number of co-investigators in the project: 2

Call: SONATA 13 - announced on 2017-06-14

Amount awarded: 519 000 PLN

Project start date (Y-m-d): 2018-04-10

Project end date (Y-m-d): 2023-04-09

Project duration:: 60 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Laptop Asus ROG Strix.
  2. Serwer komputerowy (45 000 PLN)
  3. Klaster komputerowy (40 000 PLN)
  4. Monitor komputerowy (3 000 PLN)
  5. Zasilacz awaryjny UPS (7 000 PLN)
  6. Tablet z klawiaturą i rysikiem.
  7. Przenośny komputer osobisty (18 000 PLN)

Information in the final report

  • Publication in academic press/journals (8)
  • Book publications / chapters in book publications (1)
  1. Prediction of protein subplastid localization and origin with PlastoGram
    Authors:
    Katarzyna Sidorczuk, Przemysław Gagat, Jakub Kała, Henrik Nielsen, Filip Pietluch, Paweł Mackiewicz, Michał Burdukiewicz
    Academic press:
    Scientific Reports (rok: 2023, tom: 13, strony: 8365), Wydawca: Nature Publishing Group UK
    Status:
    Published
    DOI:
    10.1038/s41598-023-35296-0 - link to the publication
  2. Dating the Origin and Spread of Plastids and Chromatophores
    Authors:
    Filip Pietluch, Paweł Mackiewicz, Katarzyna Sidorczuk, Przemysław Gagat
    Academic press:
    Systematic Biology (rok: 2022, tom: brak, strony: brak), Wydawca: Oxford University Press
    Status:
    Submitted
    DOI:
    10.1101/2022.07.01.497312 - link to the publication
  3. CancerGram: An Effective Classifier for Differentiating Anticancer from Antimicrobial Peptides
    Authors:
    Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Mateusz Bąkała, Jadwiga Słowik, Przemysław Gagat
    Academic press:
    Pharmaceutics (rok: 2020, tom: 12, strony: 45305), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/pharmaceutics12111045 - link to the publication
  4. Prediction of Signal Peptides in Proteins from Malaria Parasite
    Authors:
    Michał Burdukiewicz , Piotr Sobczyk, Jarosław Chilimoniuk, Przemysław Gagat, Paweł Mackiewicz
    Academic press:
    International Journal of Molecular Sciences (rok: 2018, tom: 19, strony: 3709), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms19123709 - link to the publication
  5. Testing Antimicrobial Properties of Selected Short Amyloids
    Authors:
    Przemysław Gagat, Anna Duda-Madej, Michał Ostrówka, Filip Pietluch, Alicja Seniuk, Paweł Mackiewicz, Michał Burdukiewicz
    Academic press:
    International Journal of Molecular Sciences (rok: 2023, tom: 24, strony: 804), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms24010804 - link to the publication
  6. Proteomic Screening for Prediction and Design of Antimicrobial Peptides with AmpGram
    Authors:
    Michał Burdukiewicz, Katarzyna Sidorczuk, Dominik Rafacz, Filip Pietluch, Jarosław Chilimoniuk, Stefan Rödiger, Przemysław Gagat
    Academic press:
    International Journal of Molecular Sciences (rok: 2020, tom: 21, strony: 45304), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ijms21124310 - link to the publication
  7. Characterization of signal and transit peptides based on motif composition and taxon-specific patterns
    Authors:
    Katarzyna Sidorczuk, Paweł Mackiewicz, Filip Pietluch, Przemysław Gagat
    Academic press:
    Scientific Reports (rok: 2023, tom: brak, strony: brak), Wydawca: Nature Publishing Group UK
    Status:
    Submitted
    DOI:
    10.21203/rs.3.rs-2926521/v1 - link to the publication
  8. Benchmarks in antimicrobial peptide prediction are biased due to the selection of negative data
    Authors:
    Katarzyna Sidorczuk, Przemysław Gagat, Filip Pietluch, Jakub Kała, Dominik Rafacz, Laura Bąkała, Jadwiga Słowik, Rafał Kolenda, Stefan Rödiger, Legana CHW Fingerhut, Ira R Cooke, Paweł Mackiewicz, Michał Burdukiewicz
    Academic press:
    Briefings in Bioinformatics (rok: 2022, tom: 23, strony: bbac343), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/bib/bbac343 - link to the publication
  1. The photosynthetic adventure of Paulinella spp.
    Authors:
    Przemysław Gagat, Katarzyna Sidorczuk, Filip Pietluch, Paweł Mackiewicz
    Book:
    Results and Problems in Cell Differentation (rok: 2020, tom: Symbiosis, strony: 353-386), Wydawca: Springer
    Status:
    Published

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