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Numerically advanced phase and amplitude demodulation for optical interference microscopy and tomography

2017/25/B/ST7/02049

Keywords

Descriptors

  • ST7_5: Mikro- i nanoelektronika, optoelektronika

Panel

ST7 – Systems and communication engineering: electronics, communication, optoelectronics

Host institution

Politechnika Warszawska, Wydział Mechatroniki

Voivodeship: mazowieckie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr Maciej Trusiak

Number of co-investigators in the project: 6

Call

OPUS 13 – announced on 2017-03-15

Amount awarded
1 265 602 PLN
Project start date
2018-01-19
Project end date
2021-07-18
Project duration
42 months (the same as in the proposal)
Project status
Project settled

Project description

Download the project description in a pdf file

Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Komputer do obliczeń naukowych (2 pcs). Cost: 20 000 PLN
  2. Laser (2 pcs). Cost: 11 000 PLN
  3. Obiektyw mikroskopowy wysokiej jakości (2 pcs). Cost: 12 000 PLN
  4. Stolik sterowany piezoelektrycznie i kontroler. Cost: 25 000 PLN

Information in the final report

Publication in academic press/journals (24)

  1. Spatially multiplexed interferometric microscopy: principles and applications to biomedical imaging

    Authors:
    José Ángel Picazo-Bueno, Maciej Trusiak, Javier García, Vicente Micó
    Academic press:
    Journal of Physics: Photonics (year: 2021, volume: 3(3), pages: 34005), Publisher: IOP Publishing
    Status:
    Published
    DOI:
    10.1088/2515-7647/abfc59 – link to the publication

  2. FPM app: an open-source MATLAB application for simple and intuitive Fourier ptychographic reconstruction

    Authors:
    Mikołaj Rogalski, Piotr Zdańkowski, Maciej Trusiak
    Academic press:
    Bioinformatics (year: 2021, volume: btab237, pages: btab237), Publisher: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btab237 – link to the publication

  3. Common-path intrinsically achromatic optical diffraction tomography

    Authors:
    Piotr Zdańkowski, Julianna Winnik, Krzysztof Patorski, Paweł Gocłowski, Michał Ziemczonok, Michał Józwik, Małgorzata Kujawińska, and Maciej Trusiak
    Academic press:
    Biomedical Optics Express (year: 2021, volume: 12(7), pages: 4219-4234), Publisher: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/BOE.428828 – link to the publication

  4. DarkFocus: numerical autofocusing in digital in-line holographic microscopy using variance of computational dark-field gradient

    Authors:
    Maciej Trusiak, Jose Angel Picazo-Bueno, Piotr Zdańkowski, Vicente Mico
    Academic press:
    Optics and Lasers in Engineering (year: 2020, volume: 134, pages: 106195), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2020.106195 – link to the publication

  5. Single-shot two-frame π-shifted spatially multiplexed interference phase microscopy

    Authors:
    M Trusiak, JA Picazo-Bueno, K Patorski, P Zdankowski, V Mico
    Academic press:
    Journal of Biomedical Optics (year: 2019, volume: 24(9), pages: 096004-1 : 096004-8), Publisher: SPIE
    Status:
    Published
    DOI:
    10.1117/1.JBO.24.9.096004 – link to the publication

  6. Single-shot isotropic quantitative phase microscopy based on color-multiplexed differential phase contrast

    Authors:
    Y Fan, J Sun, Q Chen, X Pan, M Trusiak, C Zuo
    Academic press:
    APL Photonics (year: 2019, volume: 4 (12), pages: 121301-1 : 121301:12), Publisher: AIP Publishing
    Status:
    Published
    DOI:
    10.1063/1.5124535 – link to the publication

  7. DeepDensity: Convolutional neural network based estimation of local fringe pattern density

    Authors:
    M. Cywińska, F. Brzeski, W. Krajnik, K. Patorski, C. Zuo, M. Trusiak
    Academic press:
    Optics and Lasers in Engineering (year: 2021, volume: 145, pages: 106675), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2021.106675 – link to the publication

  8. Automatized fringe pattern preprocessing using unsupervised variational image decomposition

    Authors:
    M. Cywińska, M. Trusiak, K. Patorski
    Academic press:
    Optics Express (year: 2019, volume: 16/27, pages: 22542-22562), Publisher: OSA - The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.27.022542 – link to the publication

  9. High-speed 3D shape measurement using the optimized composite fringe patterns and stereo-assisted structured light system

    Authors:
    W. Yin, S. Feng, T. Tao, L. Huang, M. Trusiak, Q. Chen, C. Zuo
    Academic press:
    Optics Express (year: 2019, volume: 46108, pages: 2411-2431), Publisher: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.27.002411 – link to the publication

  10. Hilbert–Huang transform based advanced Bessel fringe generation and demodulation for full-field vibration studies of specular reflection micro-objects

    Authors:
    Maciej Trusiak, Adam Styk, Krzysztof Patorski
    Academic press:
    Optics and Lasers in Engineering (year: 2018, volume: 110, pages: 100-112), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2018.05.021 – link to the publication

  11. Full-field vibration profilometry using time-averaged interference microscopy aided by variational analysis

    Authors:
    M Cywińska, M Trusiak, A Styk, K Patorski
    Academic press:
    Optics Express (year: 2020, volume: 28(1), pages: 435-450), Publisher: OSA - The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.28.000435 – link to the publication

  12. Temporal phase unwrapping using deep learning

    Authors:
    W Yin, Q Chen, S Feng, T Tao, L Huang, M Trusiak, A Asundi, C Zuo
    Academic press:
    Scientific Reports (year: 2019, volume: 9 (1), pages: 20175, 1-12), Publisher: Nature Publishing Group
    Status:
    Published
    DOI:
    10.1038/s41598-019-56222-3 – link to the publication

  13. Enhancing single-shot fringe pattern phase demodulation using advanced variational image decomposition

    Authors:
    Maria Cywińska, Maciej Trusiak, Chao Zuo, Krzysztof Patorski
    Academic press:
    Journal of Optics (year: 2019, volume: 21(4), pages: 45702), Publisher: IOP Publishing
    Status:
    Published
    DOI:
    10.1088/2040-8986/ab078e – link to the publication

  14. Full volume super-resolution imaging of thick mitotic spindle using 3D AO STED microscope

    Authors:
    Piotr Zdankowski, David McGloin, Jason Swedlow
    Academic press:
    Biomedical Optics Express (year: 2019, volume: 10, pages: 46037), Publisher: Optical Society of America
    Status:
    Published
    DOI:
    10.1364/BOE.10.001999 – link to the publication

  15. Three-level transmittance 2D grating with reduced spectrum and its self-imaging

    Authors:
    Krzysztof Patorski, Łukasz Służewski, Piotr Zdańkowski, Maria Cywińska, Maciej Trusiak
    Academic press:
    Optics Express (year: 2019, volume: 27, pages: 1854-1868), Publisher: Optical Society of America
    Status:
    Published
    DOI:
    10.1364/OE.27.001854 – link to the publication

  16. Single-shot slightly off-axis digital holographic microscopy with add-on module based on beamsplitter cube

    Authors:
    J. A. Picazo-Bueno, M. Trusiak, V. Micó
    Academic press:
    Optics Express (year: 2019, volume: 27, pages: 5655-5669), Publisher: Optical Society of America
    Status:
    Published
    DOI:
    10.1364/OE.27.005655 – link to the publication

  17. Moiré microstructure generated binary amplitude gratings for suppression of high diffraction orders

    Authors:
    Krzysztof Patorski, Maria Cywińska, Piotr Zdańkowski, MaciejTrusiak
    Academic press:
    Optics and Lasers in Engineering (year: 2021, volume: 147, pages: 106731), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2021.106731 – link to the publication

  18. Variational Hilbert Quantitative Phase Imaging

    Authors:
    Maciej Trusiak, Maria Cywińska, Vicente Mico, Jose Angel Picazo-Bueno, Chao Zuo, Piotr Zdańkowski, Krzysztof Patorski
    Academic press:
    Scientific Reports (year: 2020, volume: 10, pages: 13955), Publisher: Nature Publishing
    Status:
    Published
    DOI:
    10.1038/s41598-020-69717-1 – link to the publication

  19. Off-axis digital holographic multiplexing for rapid wavefront acquisition and processing

    Authors:
    Natan T. Shaked, Vicente Micó, Maciej Trusiak, Arkadiusz Kuś, and Simcha K. Mirsky
    Academic press:
    Advances in Optics and Photonics (year: 2020, volume: 12(3), pages: 556-611), Publisher: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/AOP.384612 – link to the publication

  20. Automatic fringe pattern enhancement using truly adaptive period-guided bidimensional empirical mode decomposition

    Authors:
    Paweł Gocłowski, Maciej Trusiak, Azeem Ahmad, Adam Styk, Vicente Mico, Balpreet S. Ahluwalia, and Krzysztof Patorski
    Academic press:
    Optics Express (year: 2020, volume: 28(5), pages: 6277-6293), Publisher: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.382543 – link to the publication

  21. Grating deployed total-shear 3-beam interference microscopy with reduced temporal coherence

    Authors:
    Krzysztof Patorski, Piotr Zdańkowski, and Maciej Trusiak
    Academic press:
    Optics Express (year: 2020, volume: 28(5), pages: 6893-6908), Publisher: OSA The Optical Society
    Status:
    Published
    DOI:
    10.1364/OE.383201 – link to the publication

  22. Variable zoom digital in-line holographic microscopy

    Authors:
    M Sanz, M Trusiak, J García, V Micó
    Academic press:
    Optics and Lasers in Engineering (year: 2020, volume: 127, pages: 105939), Publisher: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.optlaseng.2019.105939 – link to the publication

  23. 5-beam grating interferometry for extended phase gradient sensing

    Authors:
    Krzysztof Patorski, Łukasz Służewski, Maciej Trusiak
    Academic press:
    Optics Express (year: 2018, volume: 26, pages: 26872-26887), Publisher: Optical society of America
    Status:
    Published
    DOI:
    10.1364/OE.26.026872 – link to the publication

  24. Numerically Enhanced Stimulated Emission Depletion Microscopy with Adaptive Optics for Deep-Tissue Super-Resolved Imaging

    Authors:
    P Zdankowski, M Trusiak, D McGloin, JR Swedlow
    Academic press:
    ACS Nano (year: 2020, volume: 14, pages: 9b05891), Publisher: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/acsnano.9b05891 – link to the publication

Articles in post-conference publications (20)

  1. Single-frame fringe pattern analysis using modified variational image decomposition aided by the Hilbert transform for fast full-field quantitative phase imaging

    Authors:
    Maria Cywińska, Maciej Trusiak, Vicente Mico, Krzysztof Patorski
    Conference:
    SPIE Photonics Europe, 2018, Strasbourg, France (year: 2018, pages: 106772B), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 22-26.04.2018
    Status:
    Published

  2. Quasi-noise-free stimulated emission depletion microscopy imaging of thick samples using adaptive optics and block-matching 3D filtering

    Authors:
    Piotr Zdankowski, Maciej Trusiak, David McGloin, and Jason R. Swedlow
    Conference:
    Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP) (year: 2019, pages: ITh1C.4), Publisher: OSA Technical Digest (Optical Society of America, 2019)
    Date:
    conference 24-27 . 06
    Status:
    Published

  3. High space-bandwidth product phase imaging using VHQPI numerical add-on

    Authors:
    Maria Cywińska, Krzysztof Patorski, and Maciej Trusiak
    Conference:
    Biophotonics Congress: Optics in the Life Sciences 2021 (year: 2021, pages: NTu1C.3), Publisher: OSA The Optical Society
    Date:
    conference 12-16.04.2021
    Status:
    Published

  4. Practical Improvements Into the Fourier Ptychographic Microscopy Reconstruction Path

    Authors:
    Mikołaj Rogalski, Piotr Zdańkowski, Maciej Trusiak
    Conference:
    Biophotonics Congress: Optics in the Life Sciences 2021 (year: 2021, pages: NF2C.6), Publisher: OSA The Optical Society
    Date:
    conference 12-16.04.2021
    Status:
    Published

  5. Total-shear grating based optical diffraction tomography

    Authors:
    Piotr Zdańkowski, Julianna Winnik, Paweł Gocłowski, Maciej Trusiak
    Conference:
    Biophotonics Congress: Optics in the Life Sciences 2021 (year: 2021, pages: DM1A.5), Publisher: OSA The Optical Society
    Date:
    conference 12-16.04.2021
    Status:
    Published

  6. Single-shot two-frame interference microscopy for robust quantitative phase imaging of fixed and dynamic samples

    Authors:
    Maciej Trusiak, Jose Angel Picazo-Bueno, Mikołaj Rogalski, Maria Cywinska, Piotr Zdańkowski, Vicente Micó
    Conference:
    SPIE Optical Metrology (year: 2021, pages: 1178614), Publisher: SPIE
    Date:
    conference 21-26.06.2021
    Status:
    Published

  7. Modified variational image decomposition algorithm aided by the Hilbert transform as an alternative to 2D Hilbert-Huang transform for fringe pattern phase retrieval

    Authors:
    Maria Cywińska, Maciej Trusiak, Krzysztof Patorski, Jose Angel Picazo-Bueno, Vicente Mico
    Conference:
    SPECKLE 2018: VII International Conference on Speckle Metrology, 2018, Janów Podlaski, Poland (year: 2018, pages: 1083422), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 10-12.09.2018
    Status:
    Published

  8. An adaptive optics 3D STED microscope for super-resolution imaging of thick samples with background noise suppression using digital image processing

    Authors:
    Piotr Zdańkowski, Maciej Trusiak, Maria Cywińska, Jason R. Swedlow
    Conference:
    SPECKLE 2018: VII International Conference on Speckle Metrology, 2018, Janów Podlaski, Poland (year: 2018, pages: 108342G), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 10-12.09.2018
    Status:
    Published

  9. Multi-beam spatially multiplexed interference microscopy for phase objects examination

    Authors:
    Piotr Zdańkowski, Vicente Mico, Jose Angel Picazo-Bueno, Krzysztof Patorski, Maciej Trusiak
    Conference:
    SPIE Optical Engineering + Applications, 2018, San Diego, California, United States (year: 2018, pages: 107490J), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 19-23.08.2018
    Status:
    Published

  10. Variational approach in time-averaged interference microscopy for full-field vibration profilometry

    Authors:
    Maria Cywińska, Maciej Trusiak, Adam Styk, and Krzysztof Patorski
    Conference:
    Digital Holography and Three-Dimensional Imaging 2019 (year: 2019, pages: M3B.5), Publisher: OSA Technical Digest (Optical Society of America, 2019)
    Date:
    conference 19-23 . 05
    Status:
    Published

  11. Amplitude checker grating-based multichannel lateral shear interferometry for extended aberration sensing

    Authors:
    Łukasz Służewski, Krzysztof Patorski, Maciej Trusiak
    Conference:
    SPIE Optical Engineering + Applications, 2018, San Diego, California, United States (year: 2018, pages: 107490N), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 18-23.08.2018
    Status:
    Published

  12. Biological phase sample study using variational Hilbert imaging technique

    Authors:
    Maria Cywińska; Maciej Trusiak; Krzysztof Patorski
    Conference:
    SPIE Photonics West BiOS, 2019, San Francisco, California, United States (year: 2019, pages: 108872F), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 2-7 . 02
    Status:
    Published

  13. Common-path two-shot binary checker grating based interference microscope for quantitative bio-phase imaging

    Authors:
    Piotr Zdańkowski, Krzysztof Patorski, Maria Cywińska, and Maciej Trusiak
    Conference:
    Digital Holography and Three-Dimensional Imaging 2019 (year: 2019, pages: W1B.5), Publisher: OSA Technical Digest (Optical Society of America, 2019)
    Date:
    conference 19-23 . 05
    Status:
    Published

  14. Variational Hilbert Phase Imaging for Prostate Cell Analysis

    Authors:
    M. Cywinska, M. Trusiak, K. Patorski, P. Zdankowski, J.A. Picazo-Bueno, V. Mico
    Conference:
    Focus on Microscopy 2019 (year: 2019, pages: http://www.focusonmicroscopy.org/2019/index.html), Publisher: FOM2019
    Date:
    conference 14-17 . 04
    Status:
    Published

  15. Machine-learning based fast unsupervised variational image decomposition for fringe pattern analysis

    Authors:
    Maria Cywińska, Maciej Trusiak, Krzysztof Patorski
    Conference:
    SPIE Optical Engineering + Applications - Interferometry XX (year: 2020, pages: 114900D), Publisher: SPIE Proceedings
    Date:
    conference 24-28.08.2020
    Status:
    Published

  16. Moiré effect-based interference microscopy for biospecimen characterization

    Authors:
    Maciej Trusiak, Vicente Mico, Jose Angel Picazo-Bueno, Maria Cywińska, Piotr Zdańkowski, Krzysztof Patorski
    Conference:
    SPIE Optical Engineering + Applications, 2018, San Diego, California, United States (year: 2018, pages: 107490H), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 18-23.08.2018
    Status:
    Published

  17. 3D STED Deep Tissue Imaging Using Adaptive Optics

    Authors:
    P. Zdankowski, M. Trusiak, D. Mcgloin, J.R. Swedlow
    Conference:
    Focus on Microscopy 2019 (year: 2019, pages: http://www.focusonmicroscopy.org/2019/index.html), Publisher: FOM2019
    Date:
    conference 14-17 . 04
    Status:
    Published

  18. Upgrading a brightfield optical microscope into a robust numerically advanced interference-based phase imager

    Authors:
    Maciej Trusiak, Krzysztof Patorski, Piotr Zdańkowski, Maria Cywińska, Vicente Mico, Jose-Angel Picazo-Bueno, and Javier Garcia
    Conference:
    Imaging and Applied Optics 2019 (COSI, IS, MATH, pcAOP) (year: 2019, pages: CW4A.5), Publisher: OSA Technical Digest (Optical Society of America, 2019)
    Date:
    conference 24-27 . 06
    Status:
    Published

  19. Analysis of fringe patterns with variable density using modified variational image decomposition aided by the Hilbert Transform

    Authors:
    M. Cywińska, M. Trusiak, K. Patorski
    Conference:
    21st Czech-Polish-Slovak Optical Conference on Wave and Quantum Aspects of Contemporary Optics, 2018, Lednice, Czech Republic (year: 2018, pages: 1097609), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 03-07.09.2018
    Status:
    Published

  20. Adaptive information retrieval in automated fringe based full-field optical metrology

    Authors:
    K. Patorski, M. Trusiak
    Conference:
    SPECKLE 2018: VII International Conference on Speckle Metrology, 2018, Janów Podlaski, Poland (year: 2018, pages: 1083404), Publisher: SPIE International Society for Optics and Photonics
    Date:
    conference 10-12.09.2018
    Status:
    Published

Book publications / chapters in book publications (1)

  1. Interferometric Methods in NDE

    Authors:
    Krzysztof Patorski, Maciej Trusiak
    Book:
    Handbook of Advanced Non-Destructive Evaluation (year: 2018, volume: 1, pages: 46044), Publisher: Springer, Cham
    Status:
    Published

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Graphic design and implementation: Jakub Piotrowski