Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Algorithms for multiple alignment of genomes. Sequence alignment in a context of phylogenetic reconstruction.

2016/21/D/ST6/02952

Keywords:

sequence analysis multiple sequence alignment high throughput sequencing phylogeny

Descriptors:

  • ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

woj. śląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Adam Gudyś 

Number of co-investigators in the project: 2

Call: SONATA 11 - announced on 2016-03-15

Amount awarded: 150 000 PLN

Project start date (Y-m-d): 2017-03-16

Project end date (Y-m-d): 2022-03-15

Project duration:: 60 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Oprogramowanie (10 000 PLN)
  2. Serwer obliczeniowy (10 000 PLN)

Information in the final report

  • Publication in academic press/journals (3)
  1. PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences
    Authors:
    Andrzej Zielezinski, Sebastian Deorowicz, Adam Gudyś
    Academic press:
    Bioinformatics (rok: 2022, tom: 38(5), strony: 1447–1449), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btab837 - link to the publication
  2. Whisper: Read sorting allows robust mapping of sequencing data
    Authors:
    Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Adam Gudyś, Szymon Grabowski
    Academic press:
    Bioinformatics (rok: 2019, tom: 35(12), strony: 2043-2050), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/bty927 - link to the publication
  3. Towards the accurate alignment of over a million protein sequences: Current state of the art
    Authors:
    Santus, L., Garriga, E., Deorowicz, S., Gudyś, A., Notredame, C.
    Academic press:
    Current Opinion in Structural Biology (rok: 2023, tom: 80, strony: 102577), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.sbi.2023.102577 - link to the publication

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