Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

Delete all

Algorithms for multiple alignment of genomes. Sequence alignment in a context of phylogenetic reconstruction.

2016/21/D/ST6/02952

Keywords:

sequence analysis multiple sequence alignment high throughput sequencing phylogeny

Descriptors:

  • ST6_6: Algorithms, parallel, distributed and network algorithms, algorithmic game theory
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Politechnika Śląska, Wydział Automatyki, Elektroniki i Informatyki

woj. śląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Adam Gudyś 

Number of co-investigators in the project: 2

Call: SONATA 11 - announced on 2016-03-15

Amount awarded: 150 000 PLN

Project start date (Y-m-d): 2017-03-16

Project end date (Y-m-d): 2022-03-15

Project duration:: 60 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Oprogramowanie (10 000 PLN)
  2. Serwer obliczeniowy (10 000 PLN)

Information in the final report

  • Publication in academic press/journals (3)
  1. Whisper: Read sorting allows robust mapping of sequencing data
    Authors:
    Sebastian Deorowicz, Agnieszka Debudaj-Grabysz, Adam Gudyś, Szymon Grabowski
    Academic press:
    Bioinformatics (rok: 2019, tom: 35(12), strony: 2043-2050), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/bty927 - link to the publication
  2. Towards the accurate alignment of over a million protein sequences: Current state of the art
    Authors:
    Santus, L., Garriga, E., Deorowicz, S., Gudyś, A., Notredame, C.
    Academic press:
    Current Opinion in Structural Biology (rok: 2023, tom: 80, strony: 102577), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.sbi.2023.102577 - link to the publication
  3. PHIST: fast and accurate prediction of prokaryotic hosts from metagenomic viral sequences
    Authors:
    Andrzej Zielezinski, Sebastian Deorowicz, Adam Gudyś
    Academic press:
    Bioinformatics (rok: 2022, tom: 38(5), strony: 1447–1449), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btab837 - link to the publication

O Narodowym Centrum Nauki

Finansowanie nauki

Współpraca zagraniczna

Centrum prasowe

Deklaracja dostępności
Przetwarzanie danych osobowych
Polityka cookies

Partnerzy