Computational investigation of the dynamic and physico-chemical properties of pteridine reductase 1 of human trypanosomatid parasites, and its interactions with substrates and drugs.
2016/21/D/NZ1/02806
Keywords
Descriptors
- NZ1_4: Biologia strukturalna
- NZ1_1: Biologia molekularna
- NZ2_8: Biologia obliczeniowa
Panel
NZ1 – Molecular biology, structural biology, biotechnology: molecular biology, structural biology, biotechnology
Host institution
Uniwersytet Warszawski, Wydział Fizyki
Voivodeship: mazowieckie
Principal investigator (from the host institution)
dr Joanna Aspazja Panecka-Hofman
Number of co-investigators in the project: 4
Call
SONATA 11 – announced on 2016-03-15
- Amount awarded
- 535 400 PLN
- Project start date
- 2017-03-30
- Project end date
- 2022-11-29
- Project duration
- 68 months (the same as in the proposal)
- Project status
- Project settled
Project description
Download the project description in a pdf file
Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Equipment purchased [PL]
- 5 dysków wewnętrznych każdy po 10TB.
- dyski twarde wewnętrzne do archiwizacji danych. Cost: 39 017 PLN
- komputer przenośny. Cost: 6 000 PLN
- komputer stacjonarny. Cost: 10 000 PLN
- licencja na oprogramowanie do modelowania biomolekularnego. Cost: 18 783 PLN
- tablet iPad Pro 12.9".
Information in the final report
Publication in academic press/journals (7)
-
Multitarget, selective compound design yields picomolar inhibitors of a kinetoplastid pteridine reductase 1
- Authors:
- Ina Pöhner, Antonio Quotadamo, Joanna Panecka-Hofman, Rosaria Luciani, Matteo Santucci, Pasquale Linciano, Giacomo Landi, Flavio Di Pisa, Lucia Dello Iacono, Cecilia Pozzi, Stefano Mangani, Sheraz Gul, Gesa Witt, Bernhard Ellinger, Maria Kuzikov, Nuno Santarem, Anabela Cordeiro-da-Silva, Maria Paola Costi, Alberto Venturelli, Rebecca C. Wade
- Academic press:
- Journal of Medicinal Chemistry (year: 2022, volume: 65, pages: 9011-9033), Publisher: American Chemical Society
- Status:
- Published
- DOI:
- 10.1021/acs.jmedchem.2c00232 – link to the publication
-
Anti-trypanosomatid structure-based drug design–lessons learned from targeting the folate pathway
- Authors:
- Joanna Panecka-Hofman, Ina Poehner, Rebecca C. Wade
- Academic press:
- Expert Opinion on Drug Discovery (year: 2022, volume: 17(9), pages: 1029-1045), Publisher: Taylor and Francis Group
- Status:
- Published
- DOI:
- 10.1080/17460441.2022.2113776 – link to the publication
-
Substrate-Based Design of Cytosolic Nucleotidase IIIB Inhibitors and Structural Insights into Inhibition Mechanism
- Authors:
- Dorota Kubacka, Mateusz Kozarski, Marek R Baranowski, Radoslaw Wojcik, Joanna Panecka-Hofman, Dominika Strzelecka, Jerome Basquin, Jacek Jemielity, Joanna Kowalska
- Academic press:
- Pharmaceuticals (year: 2022, volume: 15(5), pages: 554), Publisher: MDPI
- Status:
- Published
- DOI:
- 10.3390/ph15050554 – link to the publication
-
An engineered variant of MECR reductase reveals indispensability of long-chain acyl-ACPs for mitochondrial respiration
- Authors:
- M. Tanvir Rahman, M. Kristian Koski, Joanna Panecka-Hofman, Werner Schmitz, Alexander J. Kastaniotis, Rebecca C. Wade, Rikkert K. Wierenga, J. Kalervo Hiltunen, Kaija J. Autio
- Academic press:
- Nature Communications (year: 2023, volume: 14, pages: 619), Publisher: Springer Nature
- Status:
- Published
- DOI:
- 10.1038/s41467-023-36358-7 – link to the publication
-
Allostery in Its Many Disguises: From Theory to Applications
- Authors:
- Shoshana J Wodak, Emanuele Paci, Nikolay V Dokholyan, Igor N Berezovsky, Amnon Horovitz, Jing Li, Vincent J Hilser, Ivet Bahar, John Karanicolas, Gerhard Stock, Peter Hamm, Roland H Stote, Jerome Eberhardt, Yassmine Chebaro, Annick Dejaegere, Marco Cecchini, Jean-Pierre Changeux, Peter G Bolhuis, Jocelyne Vreede, Pietro Faccioli, Simone Orioli, Riccardo Ravasio, Le Yan, Carolina Brito, Matthieu Wyart, Paraskevi Gkeka, Ivan Rivalta, Giulia Palermo, J Andrew McCammon, Joanna Panecka-Hofman, Rebecca C Wade, Antonella Di Pizio, Masha Y Niv, Ruth Nussinov, Chung-Jung Tsai, Hyunbum Jang, Dzmitry Padhorny, Dima Kozakov, Tom McLeish
- Academic press:
- Structure (year: 2019, volume: 27, pages: nd), Publisher: Elsevier
- Status:
- Published
- DOI:
- 10.1016/j.str.2019.01.003 – link to the publication
-
Application of a simple quantum chemical approach to ligand fragment scoring for Trypanosoma brucei pteridine reductase 1 inhibition
- Authors:
- Wiktoria Jedwabny, Joanna Panecka-Hofman, Edyta Dyguda-Kazimierowicz, Rebecca C. Wade, W. Andrzej Sokalski
- Academic press:
- Journal of Computer-Aided Molecular Design (year: 2017, volume: 31, pages: 715-728), Publisher: Springer International Publishing
- Status:
- Published
- DOI:
- 10.1007/s10822-017-0035-4 – link to the publication
-
Comparative mapping of on-targets and off-targets for the discovery of anti-trypanosomatid folate pathway inhibitors
- Authors:
- Joanna Panecka-Hofman, Ina Pöhner, Francesca Spyrakis, Talia Zeppelin, Flavio Di Pisa, Lucia Dello Iacono, Alessio Bonucci, Antonio Quotadamo, Alberto Venturelli, Stefano Mangani, Maria Paola Costi, Rebecca C Wade
- Academic press:
- Biochimica et Biophysica Acta (BBA)-General Subjects (year: 2017, volume: 1861, pages: 3215-3230), Publisher: Elsevier
- Status:
- Published
- DOI:
- 10.1016/j.bbagen.2017.09.012 – link to the publication
Book publications / chapters in book publications (1)
-
Hits and Lead Discovery in the Identification of New Drugs against the Trypanosomatidic Infections
- Authors:
- Theodora Calogeropoulou, George E Magoulas, Ina Pöhner, Joanna Panecka-Hofman, Pasquale Linciano, Stefania Ferrari, Nuno Santarem, Ma Dolores Jiménez-Antón, Ana Isabel Olías-Molero, José María Alunda, Anabela Cordeiro da Silva, Rebecca C Wade, Maria Paola Costi
- Book:
- Medicinal Chemistry of Neglected and Tropical Diseases: Advances in the Design and Synthesis of Antimicrobial Agents (year: 2019, volume: brak, pages: 185-231), Publisher: CRC Press, Taylor & Francis Group, Informa PLC
- Status:
- Published