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Development of a reference data set for identification of Streptococcus and Enterococcus species based on Next Generation Sequencing of 16S-23S rRNA region.

2016/21/N/NZ6/00981

Keywords:

Streptococcus Entercoccus next generation sequencing 16S-23S rRNA region

Descriptors:

  • NZ6_4: Bacteriology
  • NZ5_5: Diagnostics in human diseases
  • NZ2_7: Bioinformatics

Panel:

NZ6 - Human and animal immunology and infection: immunity, immune disorders, immunotherapy, infectious and invasive diseases, microbiology, transplantology, allergology

Host institution :

Uniwersytet Jagielloński, Wydział Biochemii, Biofizyki i Biotechnologii

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Maja Kosecka-Strojek 

Number of co-investigators in the project: 2

Call: PRELUDIUM 11 - announced on 2016-03-15

Amount awarded: 99 960 PLN

Project start date (Y-m-d): 2017-04-07

Project end date (Y-m-d): 2019-10-06

Project duration:: 30 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (4)
  • Articles in post-conference publications (5)
  • Book publications / chapters in book publications (1)
  1. Development and Validation of a Reference Data Set for Assigning Staphylococcus Species Based on Next-Generation Sequencing of the 16S-23S rRNA Region
    Authors:
    Maja Kosecka-Strojek, Artur J. Sabat, Viktoria Akkerboom, Karsten Becker, Evert van Zanten, Guido Wisselink, Jacek Miedzobrodzki, Anna M. D. (Mirjam) Kooistra-Smid and Alexander W. Friedrich
    Academic press:
    Frontiers in Cellular and Infection Microbiology (rok: 2019, tom: 9, strony: Article 278), Wydawca: Frontiers Media S.A.
    Status:
    Published
    DOI:
    10.3389/fcimb.2019.00278 - link to the publication
  2. New Insight into Genotypic and Phenotypic Relatedness of Staphylococcus aureus Strains from Human Infections or Animal Reservoirs
    Authors:
    Klaudia Lisowska-Łysiak*, Maja Kosecka-Strojek*, Joanna Białecka, Andrzej Kasprowicz, Katarzyna Garbacz, Lidia Piechowicz, Vladimir Kmet, Vincenzo Savini, Jacek Międzobrodzki * equal contribution
    Academic press:
    Polish Journal of Microbiology (rok: 2019, tom: Vol. 68, No 1, strony: 93-104), Wydawca: Polish Society of Microbiologists
    Status:
    Published
    DOI:
    10.21307/pjm-2019-011 - link to the publication
  3. Development of a reference data set for assigning Streptococcus and Enterococcus species based on next generation sequencing of the 16S-23S rRNA region
    Authors:
    Maja Kosecka-Strojek, Artur J. Sabat, Viktoria Akkerboom, Anna M. D. (Mirjam) Kooistra-Smid, Jacek Miedzobrodzki, Alexander W. Friedrich
    Academic press:
    Antimicrobial Resistance & Infection Control (rok: 2019, tom: 8, strony: Article 178), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1186/s13756-019-0622-3 - link to the publication
  4. Emergence of linezolid-resistant Staphylococcus epidermidis in the tertiary children's hospital in Cracow, Poland
    Authors:
    Maja Kosecka-Strojek, Ewa Sadowy, Iwona Gawryszewska, Joanna Klepacka, Tomasz Tomasik, Michal Michalik, Waleria Hryniewicz, Jacek Miedzobrodzki
    Academic press:
    European Journal of Clinical Microbiology & Infectious Diseases (rok: 2020, tom: Online ahead, strony: Online ahead of print), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1007/s10096-020-03893-w - link to the publication
  1. Identyfikacja istotnych klinicznie bakterii z rodzajów Streptococcus i Enterococcus z użyciem sekwencjonowania genów 16S rRNA, sodA, rpoB oraz tuf
    Authors:
    Mariola Wolska, Dorota Żabicka, Ewa Sadowy, Jacek Międzobrodzki, Maja Kosecka-Strojek
    Conference:
    V Ogólnopolska Konferencja Doktorantów Nauk o Życiu – BioOpen (rok: 2019, ), Wydawca: Uniwersytet Łódzki
    Data:
    konferencja 30.05-31.05
    Status:
    Published
  2. The identification of Enterococcus spp. at the species level using rpoB and tuf genes sequencing
    Authors:
    Alicja Dziadowiec, Mariola Wolska, Maja Kosecka-Strojek
    Conference:
    XLVII Winter School Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University - Molecules, Pathways, and Games (rok: 2020, ), Wydawca: Wydział Biochemii, Biofizyki i Biotechnologii Uniwersytetu Jagiellońskiego w Krakowie
    Data:
    konferencja 08-12.02
    Status:
    Published
  3. Application and comparison of Sanger sequencing and Vitek 2 systems for identification of clinically relevant species from Streptococcus and Enterococcus genera
    Authors:
    Mariola Wolska, Dorota Żabicka, Ewa Sadowy, Vincenzo Savini, Jacek Międzobrodzki, Maja Kosecka-Strojek
    Conference:
    FEMS ONLINE CONFERENCE ON MICROBIOLOGY 2020 (rok: 2020, ), Wydawca: Federation of European Microbiological Societies
    Data:
    konferencja 28 – 31.10
    Status:
    Submitted
  4. Development and validation of a reference data set for assigning Staphylococcus species based on next generation sequencing of the 16S-23S rRNA region
    Authors:
    Maja Kosecka-Strojek, Artur J. Sabat, Viktoria Akkerboom, Karsten Becker, Evert van Zanten, Guido Wisselink, Jacek Miedzobrodzki, Mirjam Kooistra-Smid, Alexander W. Friedrich
    Conference:
    8th Congress of European Microbiologists - FEMS2019 (rok: 2019, ), Wydawca: FEMS
    Data:
    konferencja 07.07-11.07
    Status:
    Published
  5. Comparison of phenotypic and genetic methods in species Identification of clinically relevant bacteria from Streptococcus and Enterococcus genera
    Authors:
    Mariola Wolska, Dorota Żabicka, Ewa Sadowy, Jacek Międzobrodzki, Maja Kosecka-Strojek
    Conference:
    XLVII Winter School Faculty of Biochemistry, Biophysics and Biotechnology Jagiellonian University - Molecules, Pathways, and Games (rok: 2020, ), Wydawca: Wydział Biochemii, Biofizyki i Biotechnologii Uniwersytetu Jagiellońskiego w Krakowie
    Data:
    konferencja 08-12.02
    Status:
    Published
  1. Staphylococcal Ecology and Epidemiology
    Authors:
    Maja Kosecka-Strojek, Aneta Buda, Jacek Miedzobrodzki
    Book:
    Pet-to-Man Travelling Staphylococci A World in Progress (rok: 2018, tom: n/a, strony: 45620), Wydawca: Elsevier
    Status:
    Published

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