Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Modelling of fragmentation of biomolecules induced by electron transfer in mass spectrometry

2015/17/N/ST6/03565

Keywords:

statistical dynamics of ETD biomolecule fragmentation in mass spectrometer

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Mateusz Łącki 

Number of co-investigators in the project: 2

Call: PRELUDIUM 9 - announced on 2015-03-16

Amount awarded: 93 000 PLN

Project start date (Y-m-d): 2016-02-17

Project end date (Y-m-d): 2018-02-16

Project duration:: 24 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Stacja robocza dla obliczeń proteomicznych. (14 980 PLN)

Information in the final report

  • Publication in academic press/journals (5)
  • Articles in post-conference publications (1)
  1. Conformational space and stability of ETD charge reduction products of ubiquitin
    Authors:
    Frederik Lermyte, Mateusz K. Łącki, Dirk Valkenborg, Anna Gambin, Frank Sobott
    Academic press:
    Journal of The American Society for Mass Spectrometry (rok: 2017, tom: 28, strony: 69-76), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s13361-016-1444-7 - link to the publication
  2. Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry
    Authors:
    Michał A. Ciach, Mateusz K. Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin
    Academic press:
    Journal of Computational Biology (rok: 2018, tom: 25, strony: online), Wydawca: Mary Ann Liebert, Inc.
    Status:
    Published
    DOI:
    10.1089/cmb.2017.0156 - link to the publication
  3. IsoSpec: Hyperfast Fine Structure Calculator
    Authors:
    Mateusz K. Łącki, Michał P. Startek, Dirk Valkenborg, Anna Gambin
    Academic press:
    Analitical Chemistry (rok: 2017, tom: 89, strony: 3272-3277), Wydawca: ACS Publications
    Status:
    Published
    DOI:
    10.1021/acs.analchem.6b01459 - link to the publication
  4. Leaf and plant age affects photosynthetic performance and photoprotective capacity
    Authors:
    Ludwik W. Bielczyński, Mateusz K. Łącki, Iris Hoefnagels, Anna Gambin, Roberta Croce
    Academic press:
    Plant Physiology (rok: 2017, tom: 175, strony: 1634-1648), Wydawca: American Society of Plant Biologists
    Status:
    Published
    DOI:
    10.1104/pp.17.00904 - link to the publication
  5. MassTodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry
    Authors:
    Mateusz K. Łącki, Frederik Lermyte, Błażej Miasojedow, Michał Startek, Frank Sobott, Dirk Valkenborg, Anna Gambin
    Academic press:
    Analitical Chemistry (rok: 2019, tom: 91, 3, strony: 1801-1807), Wydawca: ACS Publications
    Status:
    Published
    DOI:
    10.1021/acs.analchem.8b01479 - link to the publication
  1. May). Estimation of Rates of Reactions Triggered by Electron Transfer in Top- Down Mass Spectrometry.
    Authors:
    Michał A. Ciach, Mateusz K. Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin
    Conference:
    International Symposium on Bioinformatics Research and Applications (rok: 2017, ), Wydawca: Springer
    Data:
    konferencja 42886
    Status:
    Published

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