Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

Delete all

Modelling of fragmentation of biomolecules induced by electron transfer in mass spectrometry

2015/17/N/ST6/03565

Keywords:

statistical dynamics of ETD biomolecule fragmentation in mass spectrometer

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Mateusz Łącki 

Number of co-investigators in the project: 2

Call: PRELUDIUM 9 - announced on 2015-03-16

Amount awarded: 93 000 PLN

Project start date (Y-m-d): 2016-02-17

Project end date (Y-m-d): 2018-02-16

Project duration:: 24 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Equipment purchased [PL]

  1. Stacja robocza dla obliczeń proteomicznych. (14 980 PLN)

Information in the final report

  • Publication in academic press/journals (5)
  • Articles in post-conference publications (1)
  1. Conformational space and stability of ETD charge reduction products of ubiquitin
    Authors:
    Frederik Lermyte, Mateusz K. Łącki, Dirk Valkenborg, Anna Gambin, Frank Sobott
    Academic press:
    Journal of The American Society for Mass Spectrometry (rok: 2017, tom: 28, strony: 69-76), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s13361-016-1444-7 - link to the publication
  2. IsoSpec: Hyperfast Fine Structure Calculator
    Authors:
    Mateusz K. Łącki, Michał P. Startek, Dirk Valkenborg, Anna Gambin
    Academic press:
    Analitical Chemistry (rok: 2017, tom: 89, strony: 3272-3277), Wydawca: ACS Publications
    Status:
    Published
    DOI:
    10.1021/acs.analchem.6b01459 - link to the publication
  3. MassTodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry
    Authors:
    Mateusz K. Łącki, Frederik Lermyte, Błażej Miasojedow, Michał Startek, Frank Sobott, Dirk Valkenborg, Anna Gambin
    Academic press:
    Analitical Chemistry (rok: 2019, tom: 91, 3, strony: 1801-1807), Wydawca: ACS Publications
    Status:
    Published
    DOI:
    10.1021/acs.analchem.8b01479 - link to the publication
  4. Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry
    Authors:
    Michał A. Ciach, Mateusz K. Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin
    Academic press:
    Journal of Computational Biology (rok: 2018, tom: 25, strony: online), Wydawca: Mary Ann Liebert, Inc.
    Status:
    Published
    DOI:
    10.1089/cmb.2017.0156 - link to the publication
  5. Leaf and plant age affects photosynthetic performance and photoprotective capacity
    Authors:
    Ludwik W. Bielczyński, Mateusz K. Łącki, Iris Hoefnagels, Anna Gambin, Roberta Croce
    Academic press:
    Plant Physiology (rok: 2017, tom: 175, strony: 1634-1648), Wydawca: American Society of Plant Biologists
    Status:
    Published
    DOI:
    10.1104/pp.17.00904 - link to the publication
  1. May). Estimation of Rates of Reactions Triggered by Electron Transfer in Top- Down Mass Spectrometry.
    Authors:
    Michał A. Ciach, Mateusz K. Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin
    Conference:
    International Symposium on Bioinformatics Research and Applications (rok: 2017, ), Wydawca: Springer
    Data:
    konferencja 42886
    Status:
    Published

O Narodowym Centrum Nauki

Finansowanie nauki

Współpraca zagraniczna

Centrum prasowe

Deklaracja dostępności
Przetwarzanie danych osobowych
Polityka cookies

Partnerzy