Modelling of fragmentation of biomolecules induced by electron transfer in mass spectrometry
2015/17/N/ST6/03565
Keywords
Descriptors
- ST6_13: Bioinformatyka, bioobliczenia, obliczenia DNA i molekularne
Panel
ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution
Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki
Voivodeship: mazowieckie
Principal investigator (from the host institution)
Number of co-investigators in the project: 2
Call
PRELUDIUM 9 – announced on 2015-03-16
- Amount awarded
- 93 000 PLN
- Project start date
- 2016-02-17
- Project end date
- 2018-02-16
- Project duration
- 24 months (the same as in the proposal)
- Project status
- Project settled
Project description
Download the project description in a pdf file
Note — project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Equipment purchased [PL]
- Stacja robocza dla obliczeń proteomicznych.. Cost: 14 980 PLN
Information in the final report
Publication in academic press/journals (5)
-
MassTodon: A tool for assigning peaks and modeling electron transfer reactions in top-down mass spectrometry
- Authors:
- Mateusz K. Łącki, Frederik Lermyte, Błażej Miasojedow, Michał Startek, Frank Sobott, Dirk Valkenborg, Anna Gambin
- Academic press:
- Analitical Chemistry (year: 2019, volume: 91, 3, pages: 1801-1807), Publisher: ACS Publications
- Status:
- Published
- DOI:
- 10.1021/acs.analchem.8b01479 – link to the publication
-
Leaf and plant age affects photosynthetic performance and photoprotective capacity
- Authors:
- Ludwik W. Bielczyński, Mateusz K. Łącki, Iris Hoefnagels, Anna Gambin, Roberta Croce
- Academic press:
- Plant Physiology (year: 2017, volume: 175, pages: 1634-1648), Publisher: American Society of Plant Biologists
- Status:
- Published
- DOI:
- 10.1104/pp.17.00904 – link to the publication
-
Conformational space and stability of ETD charge reduction products of ubiquitin
- Authors:
- Frederik Lermyte, Mateusz K. Łącki, Dirk Valkenborg, Anna Gambin, Frank Sobott
- Academic press:
- Journal of The American Society for Mass Spectrometry (year: 2017, volume: 28, pages: 69-76), Publisher: Springer
- Status:
- Published
- DOI:
- 10.1007/s13361-016-1444-7 – link to the publication
-
IsoSpec: Hyperfast Fine Structure Calculator
- Authors:
- Mateusz K. Łącki, Michał P. Startek, Dirk Valkenborg, Anna Gambin
- Academic press:
- Analitical Chemistry (year: 2017, volume: 89, pages: 3272-3277), Publisher: ACS Publications
- Status:
- Published
- DOI:
- 10.1021/acs.analchem.6b01459 – link to the publication
-
Estimation of Rates of Reactions Triggered by Electron Transfer in Top-Down Mass Spectrometry
- Authors:
- Michał A. Ciach, Mateusz K. Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin
- Academic press:
- Journal of Computational Biology (year: 2018, volume: 25, pages: online), Publisher: Mary Ann Liebert, Inc.
- Status:
- Published
- DOI:
- 10.1089/cmb.2017.0156 – link to the publication
Articles in post-conference publications (1)
-
May). Estimation of Rates of Reactions Triggered by Electron Transfer in Top- Down Mass Spectrometry.
- Authors:
- Michał A. Ciach, Mateusz K. Łącki, Błażej Miasojedow, Frederik Lermyte, Dirk Valkenborg, Frank Sobott, Anna Gambin
- Conference:
- International Symposium on Bioinformatics Research and Applications (year: 2017, pages: 96-107), Publisher: Springer
- Date:
- conference 42886
- Status:
- Published