Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Modelling signal peptides based on hidden semi-Markov models for various taxonomic groups of organisms and peptide types

2015/17/N/NZ2/01845

Keywords:

signal petide prediction n-gram hidden semi-Markov models

Descriptors:

  • NZ2_3: Proteomics
  • NZ2_7: Bioinformatics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Wrocławski, Wydział Biotechnologii

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Michał Burdukiewicz 

Number of co-investigators in the project: 3

Call: PRELUDIUM 9 - announced on 2015-03-16

Amount awarded: 65 920 PLN

Project start date (Y-m-d): 2016-03-03

Project end date (Y-m-d): 2018-09-02

Project duration:: 30 months (the same as in the proposal)

Project status: Project settled

Project description

Download the project description in a pdf file

Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.

Information in the final report

  • Publication in academic press/journals (3)
  • Articles in post-conference publications (1)
  1. Prediction Of Signal Peptides In Proteins From Malaria Parasites
    Authors:
    Michał Burdukiewicz, Piotr Sobczyk, Jaroslaw Chilimoniuk, Przemysław Gagat, Pawel Mackiewicz
    Academic press:
    International Journal of Molecular Sciences (rok: 2018, tom: 19, strony: 3709), Wydawca: MDPI
    Status:
    Published
    DOI:
    brak - link to the publication
  2. Amyloidogenic motifs revealed by n-gram analysis
    Authors:
    Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska
    Academic press:
    Scientific Reports (rok: 2017, tom: 7(1), strony: 12961), Wydawca: Nature Publishing Group
    Status:
    Published
    DOI:
    10.1038/s41598-017-13210-9 - link to the publication
  3. PhyMet2: a database and toolkit for phylogenetic and metabolic analyses of methanogens
    Authors:
    Michał Burdukiewicz, Przemysław Gagat, Sławomir Jabłoński, Jarosław Chilimoniuk, Michał Gaworski, Paweł Mackiewicz, Marcin Łukaszewicz
    Academic press:
    Environmental Microbiology Reports (rok: 2018, tom: 3, strony: 378–382), Wydawca: Society for Applied Microbiology and John Wiley & Sons Ltd
    Status:
    Published
    DOI:
    10.1111/1758-2229.12648 - link to the publication
  1. Prediction of amyloidogenicity based on the n-gram analysis
    Authors:
    Michał Burdukiewicz, Piotr Sobczyk, Stefan Rödiger, Anna Duda-Madej, Paweł Mackiewicz, Małgorzata Kotulska
    Conference:
    German Conference on Bioinformatics 2017 (rok: 2017, ), Wydawca: PeerJ
    Data:
    konferencja 2017
    Status:
    Published
    DOI:
    link to the publication

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