Projects funded by the NCN
RNA structure prediction based on modeling the target sequence and homologous sequences
2015/17/N/NZ2/03360
Keywords:
structural bioinformatics bioinformatics RNA riboswitches
Descriptors:
- NZ2_7: Bioinformatics
- NZ1_4: Structural biology
- NZ1_1: Molecular biology
Panel:
NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology
Host institution :
Międzynarodowy Instytut Biologii Molekularnej i Komórkowej
woj. mazowieckie
Principal investigator (from the host institution):
Number of co-investigators in the project: 2
Call: PRELUDIUM 9 - announced on 2015-03-16
Amount awarded: 49 400 PLN
Project start date (Y-m-d): 2016-02-15
Project end date (Y-m-d): 2017-02-14
Project duration:: 12 months (the same as in the proposal)
Project status: Project settled
Project description
Download the project description in a pdf file
Note - project descriptions were prepared by the authors of the applications themselves and placed in the system in an unchanged form.
Equipment purchased [PL]
- Cztery dyski 2TB do macierzy Fujitsu (5 276 PLN)
- Komputer przenośny z pakietem Office (4 324 PLN)
Information in the final report
- Publication in academic press/journals (2)
- RNA 3D structure prediction guided by independent folding of homologous sequencesAuthors:Marcin Magnus, Kalli Kappel, Rhiju Das, Janusz M. BujnickiAcademic press:BMC Bioinformatics (rok: 2019, tom: 1,18888888888889, strony: 45306), Wydawca: BMCStatus:PublishedDOI:10.1186/s12859-019-3120-y - link to the publication
- RNA-Puzzles toolkit: a computational resource of RNA 3D structure benchmark datasets, structure manipulation, and evaluation toolsAuthors:Marcin Magnus, Maciej Antczak, Tomasz Zok, Jakub Wiedemann, Piotr Lukasiak, Yang Cao, Janusz M. Bujnicki, Eric Westhof, Marta Szachniuk, Zhichao MiaoAcademic press:Nucleic Acids Research (rok: 2020, tom: 48(2), strony: 576-588), Wydawca: Oxford University PressStatus:PublishedDOI:10.1093/nar/gkz1108 - link to the publication