Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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iCell: information processing in living organisms. The role of three-dimensional structure and multi-scale properties in controlling the biological processes in a cell.

2014/15/B/ST6/05082

Keywords:

bioinformatics systems biology digital and analog information genetics computational and mathematical modelling high performance computing multi-scale three dimensional structure

Descriptors:

  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • NZ2_10: Biological systems analysis, modelling and simulation
  • NZ2_7: Bioinformatics

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Uniwersytet Warszawski, Centrum Nowych Technologii Uniwersytetu Warszawskiego

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr hab. Dariusz Plewczyński 

Number of co-investigators in the project: 6

Call: OPUS 8 - announced on 2014-09-15

Amount awarded: 975 800 PLN

Project start date (Y-m-d): 2015-08-11

Project end date (Y-m-d): 2019-08-10

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. dysk zewnętrzny.
  2. stacje robocze (4 szt.) (80 000 PLN)
  3. komputery przenośne (3 szt.) (30 000 PLN)

Information in the final report

  • Publication in academic press/journals (46)
  • Articles in post-conference publications (6)
  • Book publications / chapters in book publications (6)
  1. 3D-GNOME: an integrated web service for structural modeling of the 3D genome
    Authors:
    Szalaj P, Michalski PJ, Wróblewski P, Tang Z, Kadlof M, Mazzocco G, Ruan Y, Plewczynski D
    Academic press:
    Nucleic Acids Res (rok: 2016, tom: 44(W1), strony: 288-293), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/nar/gkw437 - link to the publication
  2. An empirical Bayes approach for learning directed acyclic graph using MCMC algorithm
    Authors:
    Vahid Rezaei Tabar, Hamid Zareifard, Selva Salimi, Dariusz Plewczynski
    Academic press:
    Statistical Analysis and Data Mining (rok: 2019, tom: eCollection, strony: 45301), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1002/sam.11430 - link to the publication
  3. Biologically sound formal model of Hsp70 heat induction
    Authors:
    Dudziuk G, Wronowska W, Gambin A, Szymańska Z, Rybiński M
    Academic press:
    J Theor Biol (rok: 2019, tom: 478, strony: 74-101), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.jtbi.2019.05.022 - link to the publication
  4. GapRepairer: a server to model a structural gap and validate it using topological analysis
    Authors:
    Aleksandra I Jarmolinska, Michal Kadlof, Pawel Dabrowski-Tumanski, Joanna I Sulkowska
    Academic press:
    Bioinformatics (rok: 2018, tom: 34(19), strony: 3300-3307), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/bty334 - link to the publication
  5. Intermingling of chromosome territories
    Authors:
    Teresa Szczepińska Anna Maria Rusek Dariusz Plewczynski
    Academic press:
    Genes Chromosomes Cancer (rok: 2019, tom: 58(7), strony: 500-506), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1002/gcc.22736 - link to the publication
  6. Intracellular protein dynamics as a mathematical problem
    Authors:
    Lachowicz, M., Parisot, M., Szymańska, Z
    Academic press:
    Discrete Cont Dyn-B (rok: 2016, tom: 21(8), strony: 2551-2556), Wydawca: AIMS
    Status:
    Published
    DOI:
    10.3934/dcdsb.2016060 - link to the publication
  7. Machine learning polymer models of three-dimensional chromatin organization in human lymphoblastoid cells
    Authors:
    Ziad Al Bkhetan, Michal Kadlof, Agnieszka Kraft, Dariusz Plewczynski
    Academic press:
    Methods (rok: 2019, tom: 166, strony: 83-90), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.ymeth.2019.03.002 - link to the publication
  8. Oncogenes expand during evolution to withstand somatic amplification
    Authors:
    X Wang, X Li, L Zhang, S H Wong, M H T Wang, G Tse, R Z W Dai, G Nakatsu, O O Coker, Z Chen, H Ko, J Y K Chan, T Liu, C H K Cheng, A S L Cheng, K F To, D Plewczynski, J J Y Sung, J Yu, T Gin, M T V Chan, W K K Wu
    Academic press:
    Annals of Oncology (rok: 2018, tom: 29 (11), strony: 2254–2260), Wydawca: European Society for Medical Oncology and Japanese Society of Medical Oncology
    Status:
    Published
    DOI:
    10.1093/annonc/mdy397 - link to the publication
  9. Spatial chromatin architecture alteration by structural variations in human genomes at the population scale
    Authors:
    Michal Sadowski, Agnieszka Kraft, Przemyslaw Szalaj, Michal Wlasnowolski, Zhonghui Tang, Yijun Ruan, Dariusz Plewczynski
    Academic press:
    Genome Biology (rok: 2019, tom: 20(1), strony: 148), Wydawca: Springer Nature
    Status:
    Published
    DOI:
    10.1186/s13059-019-1728-x - link to the publication
  10. An integrated 3-Dimensional Genome Modeling Engine for data-driven simulation of spatial genome organization
    Authors:
    Szałaj P, Tang Z, Michalski P, Pietal MJ, Luo OJ, Sadowski M, Li X, Radew K, Ruan Y, Plewczynski D
    Academic press:
    Genome Res (rok: 2016, tom: 26(12), strony: 1697-1709), Wydawca: CSH Press
    Status:
    Published
    DOI:
    10.1101/gr.205062.116 - link to the publication
  11. Computational Approach to Dendritic Spine Taxonomy and Shape Transition Analysis
    Authors:
    Bokota G, Magnowska M, Kuśmierczyk T, Łukasik M, Roszkowska M, Plewczynski D
    Academic press:
    Front Comput Neurosci (rok: 2016, tom: -, strony: -), Wydawca: Frontiers Inc.
    Status:
    Published
    DOI:
    10.3389/fncom.2016.00140 - link to the publication
  12. Computational inference of H3K4me3 and H3K27ac domain length.
    Authors:
    Zubek J, Stitzel ML, Ucar D, Plewczynski D
    Academic press:
    PeerJ (rok: 2016, tom: -, strony: -), Wydawca: PeerJ Inc.
    Status:
    Published
    DOI:
    10.7717/peerj.1750 - link to the publication
  13. Inhibition Of Protein Disulfide Isomerase Induces Differentiation Of Acute Myeloid Leukemia Cells
    Authors:
    Justyna Chlebowska-Tuz, Olga Sokolowska, Pawel Gaj, Michal Lazniewski, Malgorzata Firczuk, Karolina Borowiec, Hanna Sas-Nowosielska, Malgorzata Bajor, Agata Malinowska, Angelika Muchowicz, Kavita Ramji, Piotr Stawinski, Mateusz Sobczak, Zofia Pilch, Anna Rodziewicz-Lurzynska, Malgorzata Zajac, Krzysztof Giannopoulos, Przemyslaw Juszczynski, Grzegorz W. Basak, Dariusz Plewczynski, Rafal Ploski, Jakub Golab, Dominika Nowis
    Academic press:
    Haematologica (rok: 2018, tom: 103, strony: 1843-1852), Wydawca: Ferrata Storti Foundation
    Status:
    Published
    DOI:
    10.3324/haematol.2018.190231 - link to the publication
  14. RNA structure interactions and ribonucleoprotein processes of the influenza A virus
    Authors:
    Dawson WK, Lazniewski M, Plewczynski D
    Academic press:
    Brief Funct Genomics (rok: 2017, tom: -, strony: -), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bfgp/elx028 - link to the publication
  15. Three-dimensional organization and dynamics of the genome
    Authors:
    Przemyslaw Szalaj, Dariusz Plewczynski
    Academic press:
    Cell Biology and Toxicology (rok: 2018, tom: 34(5), strony: 381–404), Wydawca: Springer Netherlands
    Status:
    Published
    DOI:
    10.1007/s10565-018-9428-y - link to the publication
  16. Upregulation of MLK4 promotes migratory and invasive potential of breast cancer cells
    Authors:
    Anna A. Marusiak, Monika K. Prelowska, Dawid Mehlich, Michal Lazniewski, Klaudia Kaminska, Adam Gorczynski, Aleksandra Korwat, Olga Sokolowska, Hanna Kedzierska, Jakub Golab, Wojciech Biernat, Dariusz Plewczynski, John Brognard & Dominika Nowis
    Academic press:
    Oncogene (rok: 2018, tom: -, strony: -), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41388-018-0618-0 - link to the publication
  17. 3DFlu: database of sequence and structural variability of the influenza hemagglutinin at population scale
    Authors:
    Mazzocco G, Lazniewski M, Migdał P, Szczepińska T, Radomski JP, Plewczynski D
    Academic press:
    Database (rok: 2016, tom: -, strony: -), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/database/baw130 - link to the publication
  18. Computational modelling of cancer development and growth: Modelling at multiple scales and multiscale modelling
    Authors:
    Szymańska, Z., Cytowski, M., Michell, E., Macnamara, C.K., Chaplain, M.A.J
    Academic press:
    Bulletin of Mathematical Biology (rok: 2018, tom: 80, strony: 1366-1403), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s11538-017-0292-3 - link to the publication
  19. Dendritic Spines Taxonomy: The Functional and Structural Classification • Time-Dependent Probabilistic Model of Neuronal Activation
    Authors:
    Paulina Urban, Vahid Rezaei, Grzegorz Bokota, Michał Denkiewicz, Subhadip Basu, and Dariusz Plewczynski
    Academic press:
    Journal of Computational Biology (rok: 2019, tom: 26(4), strony: 45305), Wydawca: Mary Ann Liebert Inc.
    Status:
    Published
    DOI:
    10.1089/cmb.2018.0155 - link to the publication
  20. Electron Transport in a Dioxygenase-Ferredoxin Complex: Long Range Charge Coupling between the Rieske and Non-Heme Iron Center
    Authors:
    Wayne K. Dawson, Ryota Jono, Tohru Terada, Kentaro Shimizu
    Academic press:
    Plos One (rok: 2016, tom: 11(9), strony: e0162031), Wydawca: PLOS
    Status:
    Published
    DOI:
    10.1371/journal.pone.0162031 - link to the publication
  21. Ideal free distribution of Daphnia under predation risk—model predictions and experimental verification
    Authors:
    Piotr Maszczyk, Ewa Babkiewicz, Marta Czarnocka-Cieciura, Maciej Gliwicz, Janusz Uchmański and Paulina Urban
    Academic press:
    J. Plankton Res. (rok: 2018, tom: 40(4), strony: 471-485), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/plankt/fby024 - link to the publication
  22. Implementation of an Agent-Based Parallel Tissue Modelling Framework for the Intel MIC Architecture
    Authors:
    Maciej Cytowski, Zuzanna Szymanska, Piotr Uminski, Grzegorz Andrejczuk and Krzysztof Raszkowski
    Academic press:
    Scientific Programming (rok: 2017, tom: -, strony: -), Wydawca: Hindawi Publishing Corporation
    Status:
    Published
    DOI:
    10.1155/2017/8721612 - link to the publication
  23. Novel neuro-audiological findings and further evidence for TWNK involvement in Perrault syndrome
    Authors:
    Ołdak M, Oziębło D, Pollak A, Stępniak I, Lazniewski M, Lechowicz U, Kochanek K, Furmanek M, Tacikowska G, Plewczynski D, Wolak T, Płoski R, Skarżyński H
    Academic press:
    J Trans Med (rok: 2017, tom: 15(1), strony: -), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s12967-017-1129-4 - link to the publication
  24. One protein to rule them all: The role of CCCTC-binding factor in shaping human genome in health and disease
    Authors:
    Michal Lazniewski, Wayne K.Dawson, Anna Maria Rusek, Dariusz Plewczynski
    Academic press:
    Seminars in Cell & Developmental Biology (rok: 2018, tom: S1084-9521(17), strony: 30591-8), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.semcdb.2018.08.003 - link to the publication
  25. Quantitative 3-D morphometric analysis of individual dendritic spines
    Authors:
    Basu S, Saha PK, Roszkowska M, Magnowska M, Baczynska E, Das N, Plewczynski D, Wlodarczyk J
    Academic press:
    Scientific Reports (rok: 2018, tom: 8(1), strony: 3545), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41598-018-21753-8 - link to the publication
  26. RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme
    Authors:
    Miao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; et al.
    Academic press:
    RNA 2017 May;23(5):655-672 (rok: 2017, tom: 23(5), strony: 655-672), Wydawca: Cold Spring Harbor Laboratory Press
    Status:
    Published
    DOI:
    10.1261/rna.060368.116 - link to the publication
  27. ShapeGTB: the role of local DNA shape in prioritization of functional variants in human promoters with machine learning
    Authors:
    Maja Malkowska, Julian Zubek, Dariusz Plewczynski, Lucjan S. Wyrwicz
    Academic press:
    PeerJ (rok: 2018, tom: -, strony: -), Wydawca: PeerJ
    Status:
    Published
    DOI:
    10.7717/peerj.5742 - link to the publication
  28. Social adaptation in multi-agent model of linguistic categorization is affected by network information flow
    Authors:
    J. Zubek, M. Denkiewicz, J. Barański, P. Wróblewski, J. Rączaszek-Leonardi, D. Plewczynski
    Academic press:
    PLoS ONE (rok: 2017, tom: 12(8), strony: e0182490), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0182490 - link to the publication
  29. The Proline-Rich Region of Glyceraldehyde-3-Phosphate Dehydrogenase from Human Sperm May Bind SH3 Domains, as Revealed by a Bioinformatic Study of Low-Complexity Protein Segments
    Authors:
    Marcin Tatjewski, Aleksandra Gruca, Dariusz Plewczynski, Marcin Grynberg
    Academic press:
    Molecular Reproduction & Development (rok: 2016, tom: 83, strony: 144-148), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1002/mrd.22606 - link to the publication
  30. 2dSpAn: semiautomated 2-d segmentation, classification and analysis of hippocampal dendritic spine plasticity
    Authors:
    Basu S, Plewczynski D, Saha S, Roszkowska M, Magnowska M, Baczynska E, Wlodarczyk J
    Academic press:
    Bioinformatics (rok: 2016, tom: 32(16), strony: 2490-2498), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bioinformatics/btw172 - link to the publication
  31. 3gClust: Human Protein Cluster Analysis
    Authors:
    Halder AK, Chatterjee P, Nasipuri M, Plewczynski D, Basu S.
    Academic press:
    IEEE/ACM Trans Comput Biol Bioinform (rok: 2018, tom: 1, strony: 1), Wydawca: IEEE Computer Society
    Status:
    Published
    DOI:
    10.1109/TCBB.2018.2840996 - link to the publication
  32. A Multivariate Negative-Binomial Model with Random Effects for Differential Gene-Expression Analysis of Correlated mRNA Sequencing Data
    Authors:
    Denis Kazakiewicz, Jürgen Claesen, Katarzyna Górczak, Dariusz Plewczynski, Tomasz Burzykowski
    Academic press:
    Journal of Computational Biology (rok: 2019, tom: 26, strony: 45301), Wydawca: Mary Ann Liebert Inc.
    Status:
    Published
    DOI:
    10.1089/cmb.2019.0168 - link to the publication
  33. Clinical and molecular characteristics of newly reported mitochondrial disease entity caused by biallelic PARS2 mutations
    Authors:
    Ciara E, Rokicki D, Lazniewski M, Mierzewska H, Jurkiewicz E, Bekiesińska-Figatowska M, Piekutowska-Abramczuk D, Iwanicka-Pronicka K, Szymańska E, Stawiński P, Kosińska J, Pollak A, Pronicki M, Plewczyński D, Płoski R, Pronicka E
    Academic press:
    J Hum Genet (rok: 2018, tom: -, strony: -), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s10038-017-0401-z - link to the publication
  34. FunPred 3.0: improved protein function prediction using protein interaction network
    Authors:
    Sovan Saha, Piyali Chatterjee, Subhadip Basu, Mita Nasipuri, Dariusz Plewczynski
    Academic press:
    PeerJ (rok: 2019, tom: eCollection, strony: e6830), Wydawca: PeerJ
    Status:
    Published
    DOI:
    10.7717/peerj.6830 - link to the publication
  35. Learning directed acyclic graphs by determination of candidate causes for discrete variables
    Authors:
    Vahid Rezaei Tabar, Hamid Zareifard, Selva Salimi, Dariusz Plewczynski
    Academic press:
    Journal of Statistical Computation and Simulation (rok: 2019, tom: 89, strony: 1957-1970), Wydawca: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/00949655.2019.1604709 - link to the publication
  36. SupeRNAlign: a new tool for flexible superposition of homologous RNA structures and inference of accurate structure-based sequence alignments
    Authors:
    Pawel Piatkowski, Jagoda Jablonska, Adriana Zyla, Dorota Niedzialek, Dorota Matelska, Elzbieta Jankowska, Tomasz Walen, Wayne K. Dawson and Janusz M. Bujnicki
    Academic press:
    Nucleic Acids Research (rok: 2017, tom: 45(16), strony: e150), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/nar/gkx631 - link to the publication
  37. Three-dimensional Epigenome Statistical Model: Genome-wide Chromatin Looping Prediction
    Authors:
    Ziad Al Bkhetan, Dariusz Plewczynski
    Academic press:
    Scientific Reports (rok: 2018, tom: 8(1), strony: 5217), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/s41598-018-23276-8 - link to the publication
  38. CTCF-Mediated Human 3D Genome Architecture Reveals Chromatin Topology for Transcription
    Authors:
    Tang Z, Luo OJ, Li X, Zheng M, Zhu JJ, Szalaj P, Trzaskoma P, Magalska A, Wlodarczyk J, Ruszczycki B, Michalski P, Piecuch E, Wang P, Wang D, Tian SZ, Penrad-Mobayed M, Sachs LM, Ruan X, Wei CL, Liu ET, Wilczynski GM, Plewczynski D, Li G, Ruan Y.
    Academic press:
    Cell (rok: 2015, tom: 163, strony: 1611-1627), Wydawca: Elsevier Inc.
    Status:
    Published
    DOI:
    10.1016/j.cell.2015.11.024 - link to the publication
  39. Complexity curve: a graphical measure of data complexity and classifier performance
    Authors:
    Julian Zubek and Dariusz M. Plewczynski
    Academic press:
    PeerJ (rok: 2016, tom: 2, strony: e76), Wydawca: PeerJ
    Status:
    Published
    DOI:
    10.7717/peerj-cs.76 - link to the publication
  40. Detecting reliable non interacting proteins (NIPs) significantly enhancing the computational prediction of protein-protein interactions using machine learning methods
    Authors:
    Srivastava A, Mazzocco G, Kel A, Wyrwicz LS, Plewczynski D
    Academic press:
    Molecular BioSystems (rok: 2016, tom: 12, strony: 778-785), Wydawca: Royal Society of Chemistry
    Status:
    Published
    DOI:
    10.1039/C5MB00672D - link to the publication
  41. Generalized Baum-Welch and Viterbi Algorithms Based on the Direct Dependency among Observations
    Authors:
    Vahid Rezaei Tabar, Dariusz Plewczynski, Hosna Fathipor
    Academic press:
    Journal of The Iranian Statistical Society (rok: 2018, tom: 17(2), strony: 205-225), Wydawca: Iranian Statistical Society
    Status:
    Published
    DOI:
    10.29252/jirss.17.2.10 - link to the publication
  42. Mixture of Forward-Directed and Backward-Directed Autoregressive Hidden Markov Models for Time Series Modeling
    Authors:
    Vahid Rezaei Tabar, Hosna Fathipor, Horacio Pérez-Sánchez, Farzad Eskandari, Dariusz Plewczynski
    Academic press:
    Journal of The Iranian Statistical Society (rok: 2019, tom: 18(1), strony: 89-112), Wydawca: Iranian Statistical Society
    Status:
    Published
    DOI:
    10.29252/jirss.18.1.89 - link to the publication
  43. Novel COL12A1 variant as a cause of mild familial extraecllular matrix - related myopathy
    Authors:
    Aleksandra Jezela‐Stanek, Anna Walczak, Michał Łaźniewski, Joanna Kosińska, Piotr Stawiński, Victor Murcia Pienkowski, Anna Biernacka, Małgorzata Rydzanicz, Grażyna Kostrzewa, Paweł Krajewski, Dariusz Plewczynski, Rafał Płoski
    Academic press:
    Clinical Genetics (rok: 2019, tom: 95(6), strony: 736-738), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1111/cge.13534 - link to the publication
  44. PDP-CON: prediction of domain/linker residues in protein sequences using a consensus approach.
    Authors:
    Chatterjee P, Basu S, Zubek J, Kundu M, Nasipuri M, Plewczynski D
    Academic press:
    J Mol Model (rok: 2016, tom: 22(4), strony: 22-72), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s00894-016-2933-0 - link to the publication
  45. The structural variability of the influenza A hemagglutinin receptor-binding site
    Authors:
    Michal Lazniewski, Wayne K Dawson, Teresa Szczepińska, Dariusz Plewczynski
    Academic press:
    Briefings in Functional Genomics (rok: 2017, tom: -, strony: -), Wydawca: Oxford Academic
    Status:
    Published
    DOI:
    10.1093/bfgp/elx042 - link to the publication
  46. Three-Dimensional Segmentation and Reconstruction of Neuronal Nuclei in Confocal Microscopic Images
    Authors:
    Ruszczycki B, Pels KK, Walczak A, Zamłyńska K, Such M, Szczepankiewicz AA, Hall MH, Magalska A, Magnowska M, Wolny A, Bokota G, Basu S, Pal A, Plewczynski D, Wilczyński GM
    Academic press:
    Frontiers in Neuroanatomy (rok: 2019, tom: 13, strony: 81), Wydawca: Frontiers
    Status:
    Published
    DOI:
    10.3389/fnana.2019.00081 - link to the publication
  1. Enabling Large Scale Individual-Based Modelling through High Performance Computing
    Authors:
    Cytowski M, Szymanska Z
    Conference:
    Workshop on Multiscale and Hybrid Modelling in Cell and Cell Population Biology (rok: 2015, ), Wydawca: ITM Web of Conferences EDP Sciences
    Data:
    konferencja 16-18 March 2015
    Status:
    Published
    DOI:
    link to the publication
  2. Evaluating multi-level machine learning prediction of protein-protein interactions
    Authors:
    Julian Zubek, Marcin Tatjewski, Subhadip Basu, Dariusz Plewczynski
    Conference:
    2nd Conference of the Project Information Technologies: research and their interdisciplinary applications" (rok: 2015, ), Wydawca: Instytut Podstaw Informatyki PAN
    Data:
    konferencja 22-24.10.2015
    Status:
    Published
  3. Analysis of Next-Generation Sequencing Data of miRNA for the Prediction of Breast Cancer
    Authors:
    Indrajit Saha, Shib Sankar Bhowmick, Filippo Geraci, Marco Pellegrini, Debotosh Bhattacharjee, Ujjwal Maulik, Dariusz Plewczynski
    Conference:
    International Conference on Swarm, Evolutionary, and Memetic Computing (rok: 2015, ), Wydawca: Springer
    Data:
    konferencja 18-19 December
    Status:
    Published
    DOI:
    link to the publication
  4. Deep Learning for Integrated Analysis of Breast Cancer Subtype Specific Multi-omics Data
    Authors:
    Somnath Rakshit, Indrajit Saha, Subha Shankar Chakraborty, Dariusz Plewczynski
    Conference:
    TENCON 2018 (rok: 2018, ), Wydawca: IEEE
    Data:
    konferencja 28-31 October
    Status:
    Published
  5. Multi-levels 3D Chromatin Interactions Prediction Using Epigenomic Profiles
    Authors:
    Ziad Al Bkhetan, Dariusz Plewczynski
    Conference:
    23rd International Symposium on Methodologies for Intelligent Systems, ISMIS 2017, Foundations of Intelligent Systems (rok: 2017, ), Wydawca: Springer
    Data:
    konferencja 26-29/6/2017
    Status:
    Published
    DOI:
    link to the publication
  6. Distributional Proteomics: Modelling amino acid relationships by measuring their patterns of statistical occurrence across proteins
    Authors:
    Marcin Tatjewski, Dariusz Plewczynski
    Conference:
    2nd Conference of the Project Information Technologies: research and their interdisciplinary applications" (rok: 2015, ), Wydawca: Instytut Podstaw Informatyki PAN
    Data:
    konferencja 22-24.10.2015
    Status:
    Published
  1. Chromatin: A Semi-Structured Polymer
    Authors:
    Dawson, Lazniewski, Plewczynski
    Book:
    Encyclopedia of Bioinformatics and Computational Biology: ABC of Bioinformatics (rok: 2019, tom: 2, strony: 288-307), Wydawca: Elsevier
    Status:
    Published
    DOI:
    link to the publication
  2. PDP-RF: Protein Domain Boundary Prediction Using Random Forest Classifier
    Authors:
    Piyali Chatterjee, Subhadip Basu, Julian Zubek, Mahantapas Kundu, Mita Nasipuri, Dariusz Plewczynski
    Book:
    Pattern Recognition and Machine Intelligence in the series of Lecture Notes in Computer Science (rok: 2015, tom: 9124, strony: 441-450), Wydawca: Springer International Publishing
    Status:
    Published
  3. Divide and Conquer Ensemble Method for Time Series Forecasting
    Authors:
    Jan Kostrzewa, Giovanni Mazzocco, Dariusz Plewczynski
    Book:
    Transactions on Computational Collective Intelligence XXIV (rok: 2016, tom: 9770, strony: 134-152), Wydawca: Springer
    Status:
    Published
    DOI:
    link to the publication
  4. Predicting Post-Translational Modifications from Local Sequence Fragments Using Machine Learning Algorithms: Overview and Best Practices
    Authors:
    Tatjewski M, Kierczak M, Plewczynski D
    Book:
    Prediction of Protein Secondary Structure (rok: 2016, tom: 1484, strony: 275-300), Wydawca: Springer Protocols
    Status:
    Published
  5. The World Color Survey: Data Analysis and Simulations
    Authors:
    Peter Lewinski, Michal Lukasik, Konrad Kurdej, Filip Leonarski, Natalia Bielczyk, Franciszek Rakowski, Dariusz Plewczynski
    Book:
    Complexity Applications in Language and Communication Sciences (rok: 2019, tom: 1, strony: 289-311), Wydawca: Springer
    Status:
    Published
  6. Analysis of Structural Chromosome Variants by Next Generation Sequencing Methods
    Authors:
    Dariusz Plewczynski, Sławomir Gruca, Przemysław Szałaj, Krystian Gulik, Silviene Fabiana de Oliveira, Ankit Malhotra
    Book:
    Clinical Applications For Next-Generation Sequencing (rok: 2015, tom: 1, strony: 39-61), Wydawca: Elsevier
    Status:
    Published
    DOI:
    link to the publication

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