Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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The regulatory roles of long non-coding RNAs in the context of RNA:RNA interactions

2014/15/D/NZ2/00525

Keywords:

long non-coding RNAs lncRNA splicing microRNA RNA editing

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ2_2: Genomics, transcriptomics, epigenomics

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet im. Adama Mickiewicza w Poznaniu, Wydział Biologii

woj. wielkopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Michał Szcześniak 

Number of co-investigators in the project: 3

Call: SONATA 8 - announced on 2014-09-15

Amount awarded: 411 500 PLN

Project start date (Y-m-d): 2015-07-21

Project end date (Y-m-d): 2019-07-20

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Monitor (1 407 PLN)
  2. trzy komputery osobiste (3 szt.) (15 000 PLN)

Information in the final report

  • Publication in academic press/journals (9)
  • Book publications / chapters in book publications (1)
  1. CANTATAdb: a Collection of Plant Long Non-coding RNAs
    Authors:
    Szcześniak MW, Rosikiewicz W, Makałowska I
    Academic press:
    PLANT AND CELL PHYSIOLOGY (rok: 2016, tom: 57(1), strony: 57(1):e8), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/pcp/pcv201 - link to the publication
  2. KTCNlncDB-a first platform to investigate lncRNAs expressed in human keratoconus and non-keratoconus corneas
    Authors:
    Szcześniak MW, Kabza M, Karolak JA, Rydzanicz M, Nowak DM, Ginter-Matuszewska B, Polakowski P, Ploski R, Szaflik JP, Gajecka M
    Academic press:
    Database-The Journal of Biological Databases and Curation (rok: 2017, tom: N/A, strony: 45297), Wydawca: OXFORD UNIV PRESS
    Status:
    Published
    DOI:
    10.1093/database/baw168 - link to the publication
  3. lncRNA-RNA Interactions across the Human Transcriptome
    Authors:
    Szcześniak MW, Makałowska I
    Academic press:
    PLoS One (rok: 2016, tom: 11(3), strony: 11(3):e0150353), Wydawca: PLOS
    Status:
    Published
    DOI:
    10.1371/journal.pone.0150353 - link to the publication
  4. Natural antisense transcripts in diseases: From modes of action to targeted therapies
    Authors:
    Wanowska E, Kubiak MR, Rosikiewicz W, Makałowska I, Szcześniak MW
    Academic press:
    Wiley Interdiscip Rev RNA (rok: 2018, tom: 9, strony: Brak), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1002/wrna.1461 - link to the publication
  5. SyntDB - defining orthologues of human long noncoding RNAs across primates
    Authors:
    Bryzghalov, Oleksii; Szczesniak, Michal; Makalowska, Izabela
    Academic press:
    Nucleic Acids Research (rok: 2019, tom: 48, strony: D238–D245), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gkz941 - link to the publication
  6. Towards a deeper annotation of human lncRNAs
    Authors:
    Szcześniak MW, Wanowska E, Mukherjee N, Ohler U, Makałowska I
    Academic press:
    Biochim Biophys Acta Gene Regul Mech (rok: 2019, tom: NA, strony: S1874-9399(18)30525-X), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.bbagrm.2019.05.003 - link to the publication
  7. lncEvo: automated identification and conservation study of long noncoding RNAs
    Authors:
    Bryzghalov, O., Makałowska, I. & Szcześniak, M.W.
    Academic press:
    BMC Bioinformatics (rok: 2021, tom: 22, strony: NA), Wydawca: BioMed Central
    Status:
    Published
    DOI:
    10.1186/s12859-021-03991-2 - link to the publication
  8. A chromatin-associated splicing isoform of OIP5-AS1 acts in cis to regulate the OIP5 oncogene
    Authors:
    Wanowska E, Kubiak M, Makałowska I, Szcześniak MW
    Academic press:
    RNA Biology (rok: 2021, tom: NA, strony: NA), Wydawca: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/15476286.2021.1871816 - link to the publication
  9. Retroposition as a source of antisense long non-coding RNAs with possible regulatory functions
    Authors:
    Oleksii Bryzghalov, Michał Wojciech Szcześniak, Izabela Makałowska
    Academic press:
    Acta Biochimica Polonica (rok: 2016, tom: 63, strony: 825-833), Wydawca: Polskie Towarzystwo Biochemiczne i Komitet Biochemii i Biofizyki PAN
    Status:
    Published
    DOI:
    10.18388/abp.2016_1354 - link to the publication
  1. CANTATAdb 2.0: Expanding the Collection of Plant Long Noncoding RNAs
    Authors:
    Szcześniak MW, Bryzghalov O, Ciomborowska-Basheer J, Makałowska I
    Book:
    Methods Mol Biol. (rok: 2019, tom: 1933, strony: 415-429), Wydawca: Springer
    Status:
    Published

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