Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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The application of pangenome-based approach to identify genes responsible for adaptation of pectinolytic bacteria - Dickeya solani and Pectobacterium wasabiae to causing disease symptoms on potato under temperate climate conditions.

2014/14/M/NZ8/00501

Keywords:

Dickeya solani Pectobacterium wasabiae pangenome panregulon core and accessory genome biodiversity virulence soft rot black leg

Descriptors:

  • NZ8_4: Biodiversity
  • NZ1_10: Microbiology
  • NZ2_7: Bioinformatics

Panel:

NZ8 - Evolutionary and environmental biology: evolution, ecology, population biology, biodiversity, biogeography

Host institution :

Uniwersytet Gdański, Międzyuczelniany Wydział Biotechnologii Uniwersytetu Gdańskiego i Gdańskiego Uniwersytetu Medycznego

woj. pomorskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Ewa Łojkowska 

Number of co-investigators in the project: 8

Call: HARMONIA 6 - announced on 2014-06-16

Amount awarded: 1 225 900 PLN

Project start date (Y-m-d): 2015-06-08

Project end date (Y-m-d): 2019-06-07

Project duration:: 48 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (9)
  1. A review on Dickeya solani, a new pathogenic bacterium causing loss in potato yield in Europe.
    Authors:
    M. Golanowska, E. Łojkowska*
    Academic press:
    BioTechnologia (rok: 2016, tom: 97(2), strony: 109-127), Wydawca: KB PAN
    Status:
    Published
    DOI:
    10.5114/bta.2016.60781 - link to the publication
  2. Genotypic and phenotypic variability of Pectobacterium strains causing blackleg and soft rot on potato in Turkey
    Authors:
    Ozturk M.*, Aksoy H. M., Potrykus M., Lojkowska E.
    Academic press:
    European Journal of Plant Pathology (rok: 2018, tom: 151, strony: 000-000), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s10658-018-1459-y - link to the publication
  3. Metabolic modeling of Pectobacterium parmentieri SCC3193 provides insights into metabolic pathways of plant pathogenic bacteria
    Authors:
    S. Zoledowska, L. Presta, M. Fondi, F. Decorosi, L. Giovannetti, A. Mengoni *, E. Lojkowska
    Academic press:
    Microorganisms MDPI (rok: 2019, tom: 7, 101, strony: 45306), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/microorganisms7040101 - link to the publication
  4. Population structure and biodiversity of Pectobacterium parmentieri isolated from potato fields in temperate climate
    Authors:
    Zoledowska S., Motyka A., Zukowska D., Sledz W., Lojkowska E.*
    Academic press:
    Plant Disease (rok: 2018, tom: 102, strony: 154-164), Wydawca: APS
    Status:
    Published
    DOI:
    10.1094/PDIS-05-17-0761-RE - link to the publication
  5. Interplay of classic Exp and specific Vfm quorum sensing systems on the phenotypic features of Dickeya solani strains exhibiting different virulence levels
    Authors:
    Potrykus M.*, Hugouvieux-Cotte-Pattat N., Łojkowska E.
    Academic press:
    Molecular Plant Pathology (rok: 2018, tom: 1, strony: 1238-1251), Wydawca: Wiley
    Status:
    Published
    DOI:
    10.1111/mpp.12614) - link to the publication
  6. Comparison of high and low virulent D. solani strains in a view of pangenome and panregulon studies on this species
    Authors:
    Golanowska M., Potrykus M., Motyka-Pomagruk A., Kabza M., Bacci G., Galardini M., Bazzicalupo M., Makalowska I., Smalla K., Mengoni A., Nicole Hugouvieux-Cotte-Pattat N., Lojkowska E.*
    Academic press:
    Frontiers in Microbiology (rok: 2018, tom: 9, strony: Article 1940), Wydawca: Frontiers
    Status:
    Published
    DOI:
    10.3389/fmicb.2018.01940 - link to the publication
  7. Molecular methods as tools to control plant diseases caused by Dickeya and Pectobacterium spp: A minireview
    Authors:
    A. Motyka, S. Żołędowska, W. Śledź, E. Łojkowska*
    Academic press:
    New Biotechnology (rok: 2017, tom: 39, strony: 181-189), Wydawca: ELSEVIER
    Status:
    Published
    DOI:
    10.1016/j.nbt.2017.08.010) - link to the publication
  8. The uniform structure of O-polysaccharides isolated from Dickeya solani strains of different origin
    Authors:
    K. Ossowska, M. Czerwicka, W. Sledz, S. Zoledowska, A. Motyka, M. Golanowska, G. Condemine, E. Łojkowska, Z. Kaczyński*
    Academic press:
    Carbohydrate Research (rok: 2017, tom: 445, strony: 40-43), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.carres.2017.04.001 - link to the publication
  9. High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes
    Authors:
    Zoledowska S., Motyka-Pomagruk A., W. Sledz W., Mengoni A., Lojkowska E.*
    Academic press:
    BMC Genomics (rok: 2018, tom: 19, strony: 140-149), Wydawca: BMC
    Status:
    Published
    DOI:
    10.1186/s12864-018-5140-9 - link to the publication

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