Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Resolving genetic predisposition to clinical mastitis based on whole genome sequences of 32 cows

2014/13/B/NZ9/02016

Keywords:

mastitis DNA sequence GWAS

Descriptors:

  • NZ2_7: Bioinformatics
  • NZ9_2: Animal production
  • ST1_18: Control theory and optimisation

Panel:

NZ9 - Fundamentals of applied life sciences and biotechnology: agricultural, forestry, horticulture, animal production and fishery, food and nutrition sciences, industrial biosciences, environmental biotechnology and remediation

Host institution :

Uniwersytet Przyrodniczy we Wrocławiu, Wydział Biologii i Hodowli Zwierząt

woj. dolnośląskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Joanna Szyda 

Number of co-investigators in the project: 5

Call: OPUS 7 - announced on 2014-03-17

Amount awarded: 291 700 PLN

Project start date (Y-m-d): 2015-02-05

Project end date (Y-m-d): 2018-03-04

Project duration:: 37 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Macierz dskowa do serwera (25 000 PLN)
  2. Laptop (2 szt.) (8 000 PLN)
  3. Jednostka centralna typ B (kpmputer stacjonarny) (2 431 PLN)

Information in the final report

  • Publication in academic press/journals (6)
  1. Population Structure Analysis of Bull Genomes of European and Western Ancestry
    Authors:
    Chung N.C., Szyda J., Frąszczak M., The 1000 Bull Genomes Project
    Academic press:
    Scientific Reports (rok: 2017, tom: 7, strony: 40688), Wydawca: Nature
    Status:
    Published
    DOI:
    10.1038/srep40688 - link to the publication
  2. The Genetic Background of Clinical Mastitis in Holstein-Friesian cattle
    Authors:
    Szyda J., Mielczarek M., Frąszczak J., Minozzi G., Giannico R., Williams J.L., Wojdak-Maksymiec K.
    Academic press:
    Animal (rok: 2019, tom: 0,548611111111111, strony: 2156-2163), Wydawca: Cambridge University Press
    Status:
    Published
    DOI:
    10.1017/S1751731119000338 - link to the publication
  3. Analysis of Copy Number Variations in Holstein-Friesian Cow Genomes Based on Whole Genome Sequence Data
    Authors:
    Mielczarek M., Frąszczak M., Giannico R., Minozzi G., Williams J.L., Wojdak-Maksymiec K., Szyda J.
    Academic press:
    Journal of Dairy Science (rok: 2017, tom: 100(7), strony: 5515-5525), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.3168/jds.2016-11987 - link to the publication
  4. Identification and annotation of breed-specific single nucleotide polymorphisms in Bos taurus genomes
    Authors:
    Czech B., Frąszczak M., Mielczarek M., Szyda J.
    Academic press:
    PLOS one (rok: 2018, tom: 13, strony: e0198419), Wydawca: Public Library of Science
    Status:
    Published
    DOI:
    10.1371/journal.pone.0198419 - link to the publication
  5. Assessing DNA sequence features underlying copy number variants
    Authors:
    Barski P., Mielczarek M., Frąszczak M., Szyda J.
    Academic press:
    Acta Scientiarum Polonorum Zootechnica (rok: 2019, tom: 0,751388888888889, strony: 25-30), Wydawca: West Pomeranian University of Technology, Szczecin
    Status:
    Published
    DOI:
    10.21005/asp.2019.18.2.04 - link to the publication
  6. The assessment of inter-individual variation of whole-genome DNA sequence in 32 cows.
    Authors:
    Szyda J., Frąszczak M., Mielczarek M., Giannico R., Minozzi G., Nicolazzi E.L., Kamiński S., Wojdak-Maksymiec K.
    Academic press:
    Mammalian Genome (rok: 2015, tom: 26, strony: 658-665), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s00335-015-9606-7 - link to the publication

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