Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Multi-scale model of tumor dynamics as a key component of the system for optimal anti-cancer therapy

2013/10/M/ST6/00531

Keywords:

multi-scale model of tumor complex automata,data adaptation adaptive wavelet collocation larg-scale computations visualization

Descriptors:

  • ST6_12: Scientific computing, simulation and modelling tools
  • ST6_13: Bioinformatics, biocomputing, DNA and molecular computation
  • ST6_11: Machine learning, statistical data processing and applications using signal processing (e.g. speech, image, video)

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Akademia Górniczo-Hutnicza im. Stanisława Staszica w Krakowie, Wydział Informatyki, Elektroniki i Telekomunikacji

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Witold Dzwinel 

Number of co-investigators in the project: 7

Call: HARMONIA 5 - announced on 2013-06-14

Amount awarded: 602 766 PLN

Project start date (Y-m-d): 2014-04-24

Project end date (Y-m-d): 2018-01-23

Project duration:: 45 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (9)
  • Articles in post-conference publications (16)
  • Book publications / chapters in book publications (1)
  1. Hierarchic Genetic Strategy with Maturing as a Generic Tool for Multiobjective Optimization
    Authors:
    Łazarz R., Idzik M., Gądek K., Zagórska-Gajda E.
    Academic press:
    Journal of Computational Science (rok: 2015, tom: 17, strony: 249-260), Wydawca: Elsevier Editorial System
    Status:
    Published
    DOI:
    10.1016/j.jocs.2016.03.004 - link to the publication
  2. PAM: Particle Automata in modeling of multi-scale biological systems
    Authors:
    Dzwinel W., Wcisło R., Yuen DA
    Academic press:
    ACM Transactions on Modeling and Computer Simulation (rok: 2015, tom: 26(3), strony: A20:1-21), Wydawca: ASSOC COMPUTING MACHINERY, NY USA
    Status:
    Published
    DOI:
    10.1145/2827696 - link to the publication
  3. An implementation of the Social Distances Model using multi-GPU systems
    Authors:
    Kłusek, A., Topa, P., Wąs, J., & Lubas, R.
    Academic press:
    International Journal of High Performance Computing Applications (rok: 2018, tom: 32(4), strony: 482-495), Wydawca: Sage
    Status:
    Published
    DOI:
    10.1177/1094342016679492 - link to the publication
  4. Irreducible elementary cellular automata found
    Authors:
    Magiera K., Dzwinel W.
    Academic press:
    Journal of Computational Science (rok: 2015, tom: 11, strony: 300-308), Wydawca: Elsevier, Amsterdam
    Status:
    Published
    DOI:
    10.1016/j.jocs.2015.07.001 - link to the publication
  5. Efficient model of tumor dynamics simulated in multi-GPU environment
    Authors:
    Adrian Kłusek, Marcin Łoś, Maciej Paszyński, Witold Dzwinel
    Academic press:
    The International Journal of High Performance Computing Applications (rok: 2019, tom: Vol. 33(3), strony: 489–506), Wydawca: Sage
    Status:
    Published
    DOI:
    10.1177/1094342018816772 - link to the publication
  6. Evolution of detonation formation initiated by a spatially distributed, transient energy source
    Authors:
    Regele, J. D., Kassoy, D. R., Aslani, M., & Vasilyev, O. V.
    Academic press:
    Journal of Fluid Mechanics (rok: 2016, tom: 802, strony: 305-332), Wydawca: Cambridge University Press
    Status:
    Published
    DOI:
    10.1017/jfm.2016.456 - link to the publication
  7. Parallel splitting solvers for the isogeometric analysis of the Cahn-Hilliard equation
    Authors:
    Vladimir Puzyrev, Marcin Łoś, Grzegorz Gurgul, Victor Calo, Witold Dzwinel, Maciej Paszyński
    Academic press:
    Computer methods in biomechanics and biomedical engineering (rok: 2019, tom: 22, strony: 1269-1281), Wydawca: Taylor & Francis
    Status:
    Published
    DOI:
    10.1080/10255842.2019.1661388 - link to the publication
  8. PAM: Particle Automata Model in simulation of Fusarium graminearum pathogen expansion.
    Authors:
    Wcisło R., Miller S., Dzwinel W.
    Academic press:
    Journal of Theoretical Biology (rok: 2015, tom: 389, strony: 110-122), Wydawca: Imperial College Press, London
    Status:
    Published
    DOI:
    10.018 - link to the publication
  9. Application of fast isogeometric L2 projection solver for tumor growth simulations
    Authors:
    Łoś, M, Paszyński, M., Kłusek, A., Dzwinel, W.
    Academic press:
    Computer Methods in Applied Mechanics and Engineering (rok: 2017, tom: 306, strony: 1257–1269), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.cma.2016.12.039 - link to the publication
  1. A concept of a prognostic system for personalized anti-tumor therapy based on supermodeling
    Authors:
    Dzwinel, W., Klusek, A.
    Conference:
    ICCS'2017 International Conference on Computer Simulation (rok: 2017, ), Wydawca: Procedia Computer Science
    Data:
    konferencja 12 - 14 June
    Status:
    Published
  2. Development of a Novel, SPH Solver, for Modelling of Tumor Proliferation
    Authors:
    Bartosz Minch, Filip Koperski
    Conference:
    Cracow Grid Workshop (rok: 2017, ), Wydawca: ACK Cyfronet
    Data:
    konferencja October 23-25
    Status:
    Published
  3. Simulation of Tumor Necrosis in Primary Melanoma
    Authors:
    Kłusek, A., Dzwinel W., Dudek, AZ.,
    Conference:
    48th Summer Computer Simulation Conference (rok: 2016, ), Wydawca: Simulation Series, ACM DL
    Data:
    konferencja July 24-27
    Status:
    Published
  4. Supermodeling in simulation of melanoma progression
    Authors:
    Dzwinel W., Klusek A., Vasilyev OV.
    Conference:
    International Conference of Computational Science, ICCS 2016 (rok: 2016, ), Wydawca: Procedia of Computer Science
    Data:
    konferencja 3-6.06.2016
    Status:
    Published
  5. Computer simulation of heterogeneous melanoma
    Authors:
    Kłusek, A., Dzwinel W.
    Conference:
    International Conference Cybernetic Modelling of Biological Systems MCSB 2015 (rok: 2015, ), Wydawca: DE GRUYTER
    Data:
    konferencja 14-15 maj
    Status:
    Published
  6. Tumor simulation by using supermodeling. an example of a new concept of data assimilation in modeling of complex systems
    Authors:
    Kłusek, Adrian
    Conference:
    Winter Simulatiion Conference, IEEE (rok: 2017, ), Wydawca: ACM Series
    Data:
    konferencja 39054
    Status:
    Published
  7. Particle Automata Model of Heterogeneous Melanoma Progression
    Authors:
    Panuszewska, M.
    Conference:
    Cracow Grid Workshop (rok: 2017, ), Wydawca: ACK Cyfronet
    Data:
    konferencja October 23-25
    Status:
    Published
  8. A Novel Algorithm for Coarse-Graining of Cellular Automata
    Authors:
    Magiera K., Dzwinel W.
    Conference:
    ACRI Cellular Automata for Research and Industry (rok: 2014, ), Wydawca: Springer Verlag, Lectures Note of Computer Science 8751
    Data:
    konferencja 22 - 25 wrzesień
    Status:
    Published
  9. A new computer model of melanoma progression
    Authors:
    Kłusek, A., Dzwinel W., P.Topa
    Conference:
    Proceedings of CGW'15 Workshop (rok: 2015, ), Wydawca: ACK CYFRONET
    Data:
    konferencja 26-28 paździenrik
    Status:
    Published
  10. Comparison of three models of melanoma growth based on sph solver, particle automata (pam) and cellular automata (ca) paradigms
    Authors:
    Minch B., F. Koperski, Matuła, W., Panuszewska, M.
    Conference:
    Winter Simulation Conference, IEEE (rok: 2017, ), Wydawca: ACM Conference Series
    Data:
    konferencja Dec 3-6
    Status:
    Published
  11. Continuous and discrete models of melanoma progression simulated in multi-GPU environment
    Authors:
    Dzwinel. W., Kłusek, A., Wcisło, R., Panuszewska, M., Topa, P.
    Conference:
    International Conference on Parallel Processing and Applied Mathematics (rok: 2017, ), Wydawca: Lecture Notes in Computer Science, 10777, 1-14
    Data:
    konferencja 41527
    Status:
    Published
  12. Graph-based Framework for 3-D Vascular Dynamics Simulation
    Authors:
    Łazarz, R
    Conference:
    5th International Young Scientist Conference on Computational Science (rok: 2016, ), Wydawca: Procedia Computer Science
    Data:
    konferencja 26-28 October
    Status:
    Published
  13. PAM: Discrete 3D model of tumor dynamics in presence of anti-tumor treatment
    Authors:
    Panuszewska, M., Minch, B., Wcisło, R., Dzwinel., W.,
    Conference:
    ACRI International Conference (rok: 2018, ), Wydawca: Lecture Notes in Computer Science, LNCS 11115
    Data:
    konferencja 17-21 wrzesień
    Status:
    Published
  14. Utilising distance k-graph vertex feature histograms for structural data analysis
    Authors:
    Łazarz, R., Czech, W.
    Conference:
    Proceedings of CGW'15 Workshop (rok: 2015, ), Wydawca: Academic Computer Centre CYFRONET AGH
    Data:
    konferencja 26-28 październik
    Status:
    Published
  15. Challenges in 3-D simulation of vascular graph remodelling
    Authors:
    Łazarz R
    Conference:
    CGW'2016 Cracovian Grid Workshop (rok: 2016, ), Wydawca: ACK Cyfronet
    Data:
    konferencja 24-26 October
    Status:
    Published
  16. Supermodeling concept in modeling complex dynamic systems – experiments
    Authors:
    Kłusek, A., Dzwinel, W.
    Conference:
    4th Workshop for Doctoral Students and Young Reserchers in Information Technology (rok: 2017, ), Wydawca: Polsko-Japońska Akademia Technik Komputerowych
    Data:
    konferencja 3-5 November
    Status:
    Published
  1. 1
    Authors:
    Paweł Topa
    Book:
    Cellular Automata as an efficient and flexible computational framework for modeling and simulation of real-worls, multiscale phenomena (rok: 2019, tom: 1, strony: 1-147), Wydawca: Wydawnictwa AGH, Rozprawy, Monografie habilitacyjne
    Status:
    Published
    DOI:
    link to the publication

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