Formation of spatial heterogeneities on the plama membrane and their impact on cell signaling
2013/09/N/NZ2/02631
Keywords
Descriptors
- NZ2_10: Modelowanie i symulacje biologiczne
- NZ3_7: Przekaźnictwo sygnału
- ST6_12: Obliczenia naukowe, narzędzia modelowania i symulacji
Panel
NZ2 – Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology
Host institution
Instytut Podstawowych Problemów Techniki Polska Akademia Nauk
Voivodeship: mazowieckie
Principal investigator (from the host institution)
Number of co-investigators in the project: 3
Call
PRELUDIUM 5 – announced on 2013-03-15
- Amount awarded
- 93 600 PLN
- Project start date
- 2014-05-05
- Project end date
- 2017-03-04
- Project duration
- 34 months (the same as in the proposal)
- Project status
- Project settled
Information in the final report
Publication in academic press/journals (4)
-
SPATKIN: a simulator for spatial rule-based modeling of biomolecular site dynamics
- Authors:
- Marek Kochańczyk, William S. Hlavacek, Tomasz Lipniacki
- Academic press:
- Bioinformatics (year: 2017, volume: 33, pages: 3667–3669), Publisher: Oxford University Press
- Status:
- Published
- DOI:
- 10.1093/bioinformatics/btx456 – link to the publication
-
Relaxation oscillations and hierarchy of feedbacks in MAPK signaling
- Authors:
- Marek Kochańczyk, Paweł Kocieniewski, Emilia Kozłowska, Joanna Jaruszewicz-Błońska, Breanne Sparta Michael Pargett, John G. Albeck, William S. Hlavacek, Tomasz Lipniacki
- Academic press:
- Scientific Reports (year: 2017, volume: 7, pages: 38244), Publisher: Nature Publishing Group
- Status:
- Published
- DOI:
- 10.1038/srep38244 – link to the publication
-
Effective reaction rates in diffusion-limited phosphorylation–dephosphorylation cycles
- Authors:
- Paulina Szymańska, Marek Kochańczyk, Jacek Miększ, Tomasz Lipniacki
- Academic press:
- Physical Review E (year: 2015, volume: 91, pages: 22702), Publisher: American Physical Society
- Status:
- Published
- DOI:
- 10.1103/PhysRevE.91.022702 – link to the publication
-
Effective reaction rates for diffusion-limited reaction cycles
- Authors:
- Paweł Nałęcz-Jawecki, Paulina Szymańska, Marek Kochańczyk, Jacek Miękisz, Tomasz Lipniacki
- Academic press:
- Journal of Chemical Physics (year: 2015, volume: 143, pages: 215102), Publisher: American Institute of Physics
- Status:
- Published
- DOI:
- 10.1063/1.4936131 – link to the publication