Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

Equipment

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Application of targeted next generation sequencing (NGS) in the identification of genetic markers associated with the pork quality

2013/09/D/NZ9/02452

Keywords:

next generation sequencing pig QTL

Descriptors:

  • NZ2_2: Genomics, transcriptomics, epigenomics
  • NZ2_1: Molecular genetics
  • NZ9_2: Animal production

Panel:

NZ9 - Fundamentals of applied life sciences and biotechnology: agricultural, forestry, horticulture, animal production and fishery, food and nutrition sciences, industrial biosciences, environmental biotechnology and remediation

Host institution :

Instytut Zootechniki - Państwowy Instytut Badawczy

woj. małopolskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

dr Katarzyna Piórkowska 

Number of co-investigators in the project: 6

Call: SONATA 5 - announced on 2013-03-15

Amount awarded: 611 000 PLN

Project start date (Y-m-d): 2014-02-17

Project end date (Y-m-d): 2017-09-16

Project duration:: 43 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. 2200 TapeStation Nucleic Acid System (Agilent).
  2. Sonifikator Bioruptor® NGS UCD-600 TS (Diagenode) (100 000 PLN)
  3. TagMan Array Card Block Upgrade Kit wraz z wirówką do kart TLDA.
  4. Aparat Bioanalyzer (Agilent) (120 000 PLN)

Information in the final report

  • Publication in academic press/journals (6)
  • Articles in post-conference publications (2)
  1. Detection of genetic variants between different Polish Landrace and Pulawska pigs by means of RNA-seq analysis
    Authors:
    Piórkowska K., Żukowski K., Ropka-Molik K., Tyra M.
    Academic press:
    Animal Genetics (rok: 2018, tom: 49(3), strony: 215-225), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1111/age.12654 - link to the publication
  2. A comprehensive transcriptome analysis of skeletal muscles in two Polish pig breeds differing in fat and meat quality traits
    Authors:
    Piórkowska K. , Żukowski K., Ropka-Molik K., Tyra M., Gurgul A.
    Academic press:
    Genetics and Molecular Biology (rok: 2018, tom: 41(1), strony: 125–136), Wydawca: SciELO (Scientific Library Online)
    Status:
    Published
    DOI:
    10.1590/1678-4685-GMB-2016-0101 - link to the publication
  3. Deep sequencing of a QTL-rich region spanning 128-136Mbp of pig chromosome 15
    Authors:
    Piórkowska K., Żukowski K., Ropka-Molik K., Tyra M.
    Academic press:
    Gene (rok: 2018, tom: 647, strony: 268-275), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.gene.2018.01.045 - link to the publication
  4. Transcript variants of a region on SSC15 rich in QTLs associated with meat quality in pigs
    Authors:
    Piórkowska K., Żukowski K., Szmatoła T., Ropka-Molik K.
    Academic press:
    Annals of Animal Science (rok: 2017, tom: 17 (3), strony: 703–715), Wydawca: De Gruyter
    Status:
    Published
    DOI:
    10.1515/aoas-2016-0095 - link to the publication
  5. The SSC15 QTL-rich region mutations affecting intramuscular fat and production traits in pigs
    Authors:
    Piórkowska, K. Tyra M., Żukowski K., Ropka-Molik K.
    Academic press:
    Animal Production Science (rok: 2019, tom: ., strony: .), Wydawca: .
    Status:
    Submitted
    DOI:
    . - link to the publication
  6. The effect of QTL-rich region polymorphisms identified by targeted DNA-seq on pig production traits
    Authors:
    Stuczyńska A., Piórkowska K., Tyra M., Żukowski K.
    Academic press:
    Molecular Biology Reports (rok: 2018, tom: 45(3), strony: 361-371), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s11033-018-4170-3 - link to the publication
  1. Deep sequencing of QTL-rich region on porcine chromosome 15
    Authors:
    Piórkowska K., Żukowski K., Tyra M., Ropka-Molik K.
    Conference:
    6th Central European Congress of Life Sciences EUROBIOTECH 2017, Kraków, (rok: 2017, ), Wydawca: Targi w Krakowie Ltd.
    Data:
    konferencja 11.09 – 14.09.2017 r.
    Status:
    Published
  2. Can targeted-enrichment next-generation sequencing be a potential screening tool for searching for molecular markers of growth traits in pigs?
    Authors:
    Piórkowska K., Stuczynska A. , Zukowski K.
    Conference:
    36th International Society for Animal Genetics Conference (2017) Dublin, Ireland (rok: 2017, ), Wydawca: ISAG 2017 Abstract Book
    Data:
    konferencja 7.16.2017 – 7.21.2017
    Status:
    Published
    DOI:
    link to the publication

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