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Transposons in the genomes of the first terrestial fungi (Zygomycota)

2012/07/D/NZ2/04286

Keywords

Descriptors

  • NZ2_2: Genomika, transkryptomika i epigenomika
  • NZ2_7: Bioinformatyka
  • NZ2_9: Biologia systemowa

Panel

NZ2 – Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution

Instytut Biochemii i Biofizyki PAN

Voivodeship: mazowieckie

Other projects carried out by the institution »

Principal investigator (from the host institution)

dr Anna Muszewska

Number of co-investigators in the project: 4

Call

SONATA 4 – announced on 2012-09-15

Amount awarded
499 800 PLN
Project start date
2013-07-16
Project end date
2017-07-15
Project duration
48 months (the same as in the proposal)
Project status
Project settled

Equipment purchased [PL]

  1. Serwer HP Proliant w wersji 24 lib 48 procesorowej z ponad 64GB RAM. Cost: 24 000 PLN

Information in the final report

Publication in academic press/journals (9)

  1. Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota)

    Authors:
    M.M. Teixeira, L.F. Moreno, B.J. Stielow, A. Muszewska, M. Hainaut, L. Gonzaga, A. Abouelleil, J.S.L. Patané, M. Priest, R. Souza, S. Young, K.S. Ferreira, Q. Zeng, M.M.L. da Cunha, A. Gladki, B. Barker, V.A. Vicente, E.M. de Souza, S. Almeida, B. Henrissat, A.T.R. Vasconcelos, S. Deng, H. Voglmayr, T.A.A. Moussa, A. Gorbushina, M.S.S. Felipe, C.A. Cuomo, G. Sybren de Hoog
    Academic press:
    Studies in Mycology (year: 2017, volume: S0166-0616(17), pages: 30016-7), Publisher: Science direct
    Status:
    Published
    DOI:
    10.1016/j.simyco.2017.01.001 – link to the publication

  2. Fungal lifestyle reflected in serine protease repertoire

    Authors:
    Anna Muszewska, Marta M. Stepniewska-Dziubinska,Kamil Steczkiewicz, Julia Pawlowska, Agata Dziedzic, Krzysztof Ginalski
    Academic press:
    Scientific Reports (year: 2017, volume: 7, pages: -), Publisher: Springer Nature
    Status:
    Published
    DOI:
    10.1038/s41598-017-09644-w – link to the publication

  3. Cut-and-paste transposons in fungi with diverse lifestyles

    Authors:
    Anna Muszewska, Kamil Steczkiewicz, Marta M. Stepniewska-Dziubinska, Krzysztof Ginalski
    Academic press:
    Genome Biology and Evolution (year: 2017, volume: 1;9(12), pages: 3463-3477), Publisher: Oxford Jourmals
    Status:
    Published

  4. Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain

    Authors:
    Maciej Kotliński, Lukasz Knizewski, Anna Muszewska, Kinga Rutowicz, Maciej Lirski, Anja Schmidt, Célia Baroux, Krzysztof Ginalski, Andrzej Jerzmanowski
    Academic press:
    Plant Physiology (year: 2017, volume: 174, pages: 27-34), Publisher: American Society of Plant Biologists
    Status:
    Published
    DOI:
    10.1104/pp.16.00214 – link to the publication

  5. Phylogenetic and phylogenomic definition of Rhizopus species

    Authors:
    Gryganskyi A, Golan J, Dolatabadi S, Mondo S, Robb S, Idnurm A, Muszewska A, Steczkiewicz K, Masonjones S, Liao HL, Gajdeczka MT1, Anike F, Vuek A, Anishchenko IM, Voigt K, de Hoog GS, Smith ME, Heitman J, Vilgalys R, Stajich JE
    Academic press:
    G3: Genes, Genomes, Genetics (year: 2018, volume: vol. 8 no. 6, pages: 2007-2018), Publisher: The Genetics Society of America
    Status:
    Published
    DOI:
    10.1534/g3.118.200235 – link to the publication

  6. Phosphorylation of spore coat proteins by a family of atypical protein kinases.

    Authors:
    Nguyen KB, Sreelatha A, Durrant ES, Lopez-Garrido J, Muszewska A, Dudkiewicz M, Grynberg M, Yee S, Pogliano K, Tomchick DR, Pawłowski K, Dixon JE, Tagliabracci VS.
    Academic press:
    Proceedings of the National Academy of Sciences of the United States of America (year: 2016, volume: 113(25), pages: E3482-91), Publisher: National Academy of Sciences
    Status:
    Published
    DOI:
    10.1073/pnas.1605917113. – link to the publication

  7. Fungal genomes tell a story of ecological adaptations

    Authors:
    Anna Muszewska
    Academic press:
    Folia Biologica et Oecologica (year: 2014, volume: 10, pages: 46282), Publisher: DE GRUYTER
    Status:
    Published
    DOI:
    10.2478/fobio-2014-0011 – link to the publication

  8. Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota)

    Authors:
    Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
    Academic press:
    Studies in Mycology (year: 2017, volume: 86, pages: 46050), Publisher: Elsevier B.V.
    Status:
    Published

  9. Biology, systematics, and clinical manifestations of Zygomycota infections

    Authors:
    Anna Muszewska, Julia Pawłowska, Paweł Krzyściak
    Academic press:
    European Journal of Clinical Microbiology & Infectious Diseases (year: 2014, volume: 33, pages: 1273-1287), Publisher: Springer
    Status:
    Published
    DOI:
    10.1007/s10096-014-2076-0 – link to the publication

Articles in post-conference publications (1)

  1. Detecting Locus Acquisition Events in Gene Trees

    Authors:
    Michał Ciach, Anna Muszewska and Paweł Górecki.
    Conference:
    17th International Workshop on Algorithms in Bioinformatics (WABI 2017) (year: 2017, pages: -), Publisher: Schloss Dagstuhl--Leibniz-Zentrum fuer Informatik
    Date:
    conference 21-23.08.2017
    Status:
    Published
    DOI:
    link to the publication

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