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Information on the principal investigator and host institution

Information of the project and the call

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Modelling stress-induced transposon activity

2012/06/M/ST6/00438

Keywords:

transposon environmental stress proliferation stochastic model

Descriptors:

  • ST6_13:
  • ST6_12:
  • ST6_11:

Panel:

ST6 - Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems

Host institution :

Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Anna Barbara Gambin 

Number of co-investigators in the project: 6

Call: HARMONIA 3 - announced on 2012-06-15

Amount awarded: 396 000 PLN

Project start date (Y-m-d): 2013-03-27

Project end date (Y-m-d): 2016-09-26

Project duration:: 42 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (7)
  • Articles in post-conference publications (1)
  1. Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations.
    Authors:
    Startek M, Le Rouzic A, Capy P, Grzebelus D, Gambin A.
    Academic press:
    Theoretical Population Biology (), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.tpb.2013.07.004 - link to the publication
  2. MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula.
    Authors:
    Stawujak K, Startek M, Gambin A, Grzebelus D
    Academic press:
    Genetica (rok: 2015, tom: 143(4), strony: 433-440), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s10709-015-9842-5 - link to the publication
  3. Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination
    Authors:
    Startek M, Szafranski P, Gambin T, Campbell IM, Hixson P, Shaw CA, Stankiewicz P, Gambin A.
    Academic press:
    Nucleic Acids Res (rok: 2015, tom: 43(4), strony: 2188-98), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/nar/gku1394 - link to the publication
  4. Inferring transposons activity chronology by TRANScendence: TEs database and de-novo mining tool
    Authors:
    M. Startek, J. Nogły, A. Gromadka, D. Grzebelus, A. Gambin
    Academic press:
    BMC Bioinformatics (tom: 18 (suppl 12), strony: ), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1186/s12859-017-1824-4 - link to the publication
  5. Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations.
    Authors:
    Startek M, Le Rouzic A, Capy P, Grzebelus D, Gambin A.
    Academic press:
    Theoretical Population Biology (rok: 2013, tom: 90, strony: 145-151), Wydawca: Elsevier
    Status:
    Published
    DOI:
    10.1016/j.tpb.2013.07.004 - link to the publication
  6. Leaf and Plant Age Affects Photosynthetic Performance and Photoprotective Capacity
    Authors:
    Ludwik W. Bielczynski, Mateusz K. Łącki, Iris Hoefnagels, Anna Gambin, Roberta Croce
    Academic press:
    Plant Physiology (rok: 2017, tom: 175(4), strony: 1634-1648), Wydawca: American Society of Plant Biologists
    Status:
    Published
    DOI:
    10.1104/pp.17.00904 - link to the publication
  7. Inferring transposons activity chronology by TRANScendence: TEs database and de-novo mining tool
    Authors:
    M. Startek, J. Nogły, A. Gromadka, D. Grzebelus, A. Gambin
    Academic press:
    BMC Bioinformatics (rok: 2017, tom: 18 (suppl 12), strony: 422), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1186/s12859-017-1824-4 - link to the publication
  1. TRANScendence: transposable elements database and de-novo mining tool allows inferring TEs activity chronology
    Authors:
    Michał Startek, Jakub Nogł􏰀y, Dariusz Grzebelus, Anna Gambin
    Conference:
    The International Symposium on Bioinformatics Research and Applications (rok: 2016, ), Wydawca: Springer
    Data:
    konferencja Jun 5, 2016 - Jun 8, 2016
    Status:
    Published

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