Modelling stress-induced transposon activity
2012/06/M/ST6/00438
Keywords
Descriptors
- ST6_13: Bioinformatyka, bioobliczenia, obliczenia DNA i molekularne
- ST6_12: Obliczenia naukowe, narzędzia modelowania i symulacji
- ST6_11: Uczenie maszynowe, statystyczne przetwarzanie danych i zastosowanie w przetwarzaniu sygnałów
Panel
ST6 – Computer science and informatics: informatics and information systems, computer science, scientific computing, intelligent systems
Host institution
Uniwersytet Warszawski, Wydział Matematyki, Informatyki i Mechaniki
Voivodeship: mazowieckie
Principal investigator (from the host institution)
Number of co-investigators in the project: 6
Call
HARMONIA 3 – announced on 2012-06-15
- Amount awarded
- 396 000 PLN
- Project start date
- 2013-03-27
- Project end date
- 2016-09-26
- Project duration
- 42 months (the same as in the proposal)
- Project status
- Project settled
Information in the final report
Publication in academic press/journals (6)
-
Leaf and Plant Age Affects Photosynthetic Performance and Photoprotective Capacity
- Authors:
- Ludwik W. Bielczynski, Mateusz K. Łącki, Iris Hoefnagels, Anna Gambin, Roberta Croce
- Academic press:
- Plant Physiology (year: 2017, volume: 175(4), pages: 1634-1648), Publisher: American Society of Plant Biologists
- Status:
- Published
- DOI:
- 10.1104/pp.17.00904 – link to the publication
-
Inferring transposons activity chronology by TRANScendence: TEs database and de-novo mining tool
- Authors:
- M. Startek, J. Nogły, A. Gromadka, D. Grzebelus, A. Gambin
- Academic press:
- BMC Bioinformatics (year: 2017, volume: 18 (suppl 12), pages: 422), Publisher: Springer
- Status:
- Published
- DOI:
- 10.1186/s12859-017-1824-4 – link to the publication
-
MuTAnT: a family of Mutator-like transposable elements targeting TA microsatellites in Medicago truncatula.
- Authors:
- Stawujak K, Startek M, Gambin A, Grzebelus D
- Academic press:
- Genetica (year: 2015, volume: 143(4), pages: 433-440), Publisher: Springer
- Status:
- Published
- DOI:
- 10.1007/s10709-015-9842-5 – link to the publication
-
Genomic parasites or symbionts? Modeling the effects of environmental pressure on transposition activity in asexual populations.
- Authors:
- Startek M, Le Rouzic A, Capy P, Grzebelus D, Gambin A.
- Academic press:
- Theoretical Population Biology (year: 2013, volume: 90, pages: 145-151), Publisher: Elsevier
- Status:
- Published
- DOI:
- 10.1016/j.tpb.2013.07.004 – link to the publication
-
Recurrent HERV-H-mediated 3q13.2-q13.31 deletions cause a syndrome of hypotonia and motor, language, and cognitive delays.
- Authors:
- Shuvarikov A, Campbell IM, Dittwald P, Neill NJ, Bialer MG, Moore C, Wheeler PG, Wallace SE, Hannibal MC, Murray MF, Giovanni MA, Terespolsky D, Sodhi S, Cassina M, Viskochil D, Moghaddam B, Herman K, Brown CW, Beck CR, Gambin A, Cheung SW, Patel A, Lamb AN, Shaffer LG, Ellison JW, Ravnan JB, Stankiewicz P, Rosenfeld JA.
- Academic press:
- Human Mutation (year: 2013, volume: 34(10), pages: 1415-1423.), Publisher: Wiley Online Library
- Status:
- Published
- DOI:
- 10.1002/humu.22384. – link to the publication
-
Genome-wide analyses of LINE-LINE-mediated nonallelic homologous recombination
- Authors:
- Startek M, Szafranski P, Gambin T, Campbell IM, Hixson P, Shaw CA, Stankiewicz P, Gambin A.
- Academic press:
- Nucleic Acids Res (year: 2015, volume: 43(4), pages: 2188-98), Publisher: Oxford University Press
- Status:
- Published
- DOI:
- 10.1093/nar/gku1394 – link to the publication
Articles in post-conference publications (1)
-
TRANScendence: transposable elements database and de-novo mining tool allows inferring TEs activity chronology
- Authors:
- Michał Startek, Jakub Nogły, Dariusz Grzebelus, Anna Gambin
- Conference:
- The International Symposium on Bioinformatics Research and Applications (year: 2016, pages: 342-345), Publisher: Springer
- Date:
- conference Jun 5, 2016 - Jun 8, 2016
- Status:
- Published