Projects search

Ribosomal DNA loci derived from Brachypodium stacei are switched off for major parts of the life cycle of Brachypodium hybridum

Authors:

Natalia Borowska-Zuchowska, Ewa Robaszkiewicz, Elzbieta Wolny, Alexander Betekhtin, Robert Hasterok

Academic press:

Journal of Experimental Botany (year: 2019, volume: 70, pages: 805–815), Publisher: Oxford University Press on behalf of the Society for Experimental Biology

Status:

Published

DOI:

10.1093/jxb/ery425 – link to the publication

Dissecting the chromosomal composition of mutagen-induced micronuclei in Brachypodium distachyon using multicolour FISH

Authors:

Arita Kus, Jolanta Kwasniewska, Joanna Szymanowska-Pulka, Robert Hasterok

Academic press:

Annals of Botany (year: 2018, volume: 122, pages: 1161–1171), Publisher: Oxford University Press

Status:

Published

DOI:

10.1093/aob/mcy115 – link to the publication

In situ analysis of epigenetic modifications in the chromatin of Brachypodium distachyon embryos

Authors:

Elzbieta Wolny, Agnieszka Braszewska-Zalewska, Daria Kroczek, Robert Hasterok

Academic press:

Plant Signaling & Behavior (year: 2015, volume: 10, pages: e1011948 (1-2)), Publisher: Taylor & Francis Group

Status:

Published

DOI:

10.1080/15592324.2015.1011948 – link to the publication

Reconstructing the evolution of Brachypodium genomes using comparative chromosome painting

Authors:

Alexander Betekhtin, Glyn Jenkins, Robert Hasterok

Academic press:

PLOS ONE (year: 2014, volume: 9, pages: e115108 (1-26)), Publisher: Public Library od Science

Status:

Published

DOI:

10.1371/journal.pone.0115108 – link to the publication

Spatial distribution of epigenetic modifications in Brachypodium distachyon embryos during seed maturation and germination

Authors:

Elzbieta Wolny, Agnieszka Braszewska-Zalewska, Robert Hasterok

Academic press:

PLOS ONE (year: 2014, volume: 9, pages: e101246 (1-10)), Publisher: Public Library of Science

Status:

Published

DOI:

10.1371/journal.pone.0101246 – link to the publication

Cytomolecular analysis of ribosomal DNA evolution in a natural allotetraploid Brachypodium hybridum and its putative ancestors — dissecting complex repetitive structure of intergenic spacers

Authors:

Natalia Borowska-Zuchowska, Miroslaw Kwasniewski, Robert Hasterok

Academic press:

Frontiers in Plant Science (year: 2016, volume: 7, pages: 1499 (1-15)), Publisher: Frontiers

Status:

Published

DOI:

10.3389/fpls.2016.01499 – link to the publication

Chromosome territory modeller and viewer

Authors:

Magdalena A. Tkacz, Kornel Chrominski, Dominika Idziak-Helmcke, Ewa Robaszkiewicz, Robert Hasterok

Academic press:

PLOS ONE (year: 2016, volume: 11, pages: e0160303 (1-20)), Publisher: Public Library od Science

Status:

Published

DOI:

10.1371/journal. – link to the publication

Spatial distribution of centromeres and telomeres at interphase varies among Brachypodium species

Authors:

Dominika Idziak, Ewa Robaszkiewicz, Robert Hasterok

Academic press:

Journal of Experimental Botany (year: 2015, volume: 66, pages: 6623-6634), Publisher: Oxford Journals

Status:

Published

Insight into the karyotype evolution of Brachypodium species using comparative chromosome barcoding

Authors:

Dominika Idziak, Iwona Hazuka, Beata Poliwczak, Anna Wiszynska, Elzbieta Wolny, Robert Hasterok

Academic press:

PLOS ONE (year: 2014, volume: 9, pages: e93503 (1-10)), Publisher: Public Library od Science

Status:

Published

DOI:

10.1371/journal.pone.0093503 – link to the publication

Epigenetics of the preferential silencing of Brachypodium stacei-originated 35S rDNA loci in the allotetraploid grass Brachypodium hybridum

Authors:

Natalia Borowska-Zuchowska, Robert Hasterok

Academic press:

Scientific Reports (year: 2017, volume: 7, pages: 5260 (1-12)), Publisher: Nature Publishing Group

Status:

Published

DOI:

10.1038/s41598-017-05413-x – link to the publication

Chromosome identification and reconstruction of evolutionary rearrangements in Brachypodium distachyon, B. stacei and B. hybridum

Authors:

Joanna Lusinska, Joanna Majka, Alexander Betekhtin, Karolina Susek, Elzbieta Wolny, Robert Hasterok

Academic press:

Annals of Botany (year: 2018, volume: 122, pages: 445–459), Publisher: Oxford University Press

Status:

Published

DOI:

10.1093/aob/mcy086 – link to the publication

The arrangement of Brachypodium distachyon chromosomes in interphase nuclei

Authors:

Ewa Robaszkiewicz, Dominika Idziak-Helmcke, Magdalena A. Tkacz, Kornel Chrominski, Robert Hasterok

Academic press:

Journal of Experimental Botany (year: 2016, volume: 67, pages: 5571–5583), Publisher: Oxford Journals

Status:

Published

DOI:

10.1093/jxb/erw325 – link to the publication

Karyotyping of Brachypodium pinnatum (2n = 18) chromosomes using cross-species BAC–FISH

Authors:

Elzbieta Wolny, Wojciech Fidyk, Robert Hasterok

Academic press:

Genome (year: 2013, volume: 56, pages: 239-243), Publisher: NRC Research Press Journal

Status:

Published

DOI:

10.1139/gen-2013-001 – link to the publication

Brachypodium distachyon - a useful model in the qualification of mutagen-induced micronuclei using multicolor FISH

Authors:

Arita Kus, Jolanta Kwasniewska, Robert Hasterok

Academic press:

PLOS ONE (year: 2017, volume: 12, pages: e0170618-1-e0170618-13), Publisher: Public Library od Science

Status:

Published

DOI:

10.1371/journal.pone.0170618 – link to the publication

Histone H3 and H4 acetylation patterns are more dynamic than those of DNA methylation in Brachypodium distachyon embryos during seed maturation and germination

Authors:

Elzbieta Wolny, Agnieszka Braszewska-Zalewska, Daria Kroczek, Robert Hasterok

Academic press:

Protoplasma (year: 2017, volume: 254, pages: 2045–2052), Publisher: Springer Wien

Status:

Published

DOI:

10.1007/s00709-017-1088-x – link to the publication

Detecting Brachypodium distachyon chromosomes Bd4 and Bd5 in MH- and X-ray-induced micronuclei using mcFISH

Authors:

Arita Kus, Joanna Szymanowska-Pułka, Jolanta Kwasniewska, Robert Hasterok

Academic press:

International Journal of Molecular Sciences (year: 2019, volume: 20, pages: 2848 (1-13)), Publisher: Multidisciplinary Digital Publishing Institute

Status:

Published

DOI:

10.3390/ijms20112848 – link to the publication

Update on genomics and basic biology of Brachypodium

Authors:

International Brachypodium Initiative (IBI): Pilar Catalan, Boulos Chalhoub, Vincent Chochois, David F. Garvin, Robert Hasterok, Antonio J. Manzaneda, Luis A.J. Mur, Nicola Pecchioni, Søren K. Rasmussen, John P. Vogel, Aline Voxeur

Academic press:

Trends in Plant Science (year: 2014, volume: 19, pages: 414-418), Publisher: Elsevier

Status:

Published

DOI:

10.1016/j.tplants.2014.05.002 – link to the publication

Comparatively barcoded chromosomes of Brachypodium perennials tell the story of their karyotype structure and evolution

Authors:

Joanna Lusinska, Alexander Betekhtin, Diana Lopez-Alvarez, Pilar Catalan, Glyn Jenkins, Elzbieta Wolny, Robert Hasterok

Academic press:

International Journal of Molecular Sciences (year: 2019, volume: 20, pages: 5557 (1-19)), Publisher: Multidisciplinary Digital Publishing Institute

Status:

Published

DOI:

10.3390/ijms20225557 – link to the publication

Gradual polyploid genome evolution revealed by a pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

Authors:

Sean P. Gordon, Bruno Contreras-Moreira, Joshua J. Levy, Armin Djamei, Angelika Czedik-Eysenberg, Virginia S. Tartaglio, Adam Session, Joel Martin, Amy Cartwright, Andrew Katz, Vasanth R. Singan, Eugene Goltsman, Kerrie Barry, Vinh Ha Dinh-Thi, Boulos Chalhoub, Antonio Diaz-Perez, Ruben Sancho, Joanna Lusinska, Elzbieta Wolny, Candida Nibau, John H. Doonan, Luis Mur, Chris Plott, Jerry Jenkins, Samuel P. Hazen, Scott J. Lee, Shenquaing Shu, David Goodstein, Daniel Rokhsar, Jeremy Schmutz, Robert Hasterok, Pilar Catalan, John P. Vogel

Status:

Accepted for publication

Molecular cytogenetics in the genus Brachypodium

Authors:

Robert Hasterok, Alexander Betekhtin, Natalia Borowska-Zuchowska, Agnieszka Braszewska-Zalewska, Dominika Idziak-Helmcke, Ewa Robaszkiewicz, Elzbieta Wolny

Book:

Genetics and Genomics of Brachypodium (Plant Genetics and Genomics: Crops Models) (year: 2015, volume: 18, pages: 39-54), Publisher: Springer International Publishing Switzerland

Status:

Published

Methods for cytogenetic chromosome barcoding and chromosome iainting in Brachypodium distachyon and its relative species

Authors:

Dominika Idziak-Helmcke, Alexander Betekhtin

Book:

Brachypodium Genomics (Methods and Protocols: Methods in Molecular Biology) (year: 2018, volume: 1667, pages: 46041), Publisher: Springer Science+Business Media LLC

Status:

Published