Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

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Genomics of adaptation in oak and beech, as model forest tree species

2012/04/A/NZ9/00500

Keywords:

phenology candidate genes nucleotide polymorphism DNA sequencing Next Generation Sequencing global changes microsatellites gene flow gene conservation Quercus Fagus evolutionary genomics,

Descriptors:

  • NZ9_3: Forestry
  • NZ8_9: Population genetics
  • NZ2_2: Genomics, transcriptomics, epigenomics

Panel:

NZ9 - Fundamentals of applied life sciences and biotechnology: agricultural, forestry, horticulture, animal production and fishery, food and nutrition sciences, industrial biosciences, environmental biotechnology and remediation

Host institution :

Uniwersytet Kazimierza Wielkiego, Wydział Nauk Przyrodniczych

woj. kujawsko-pomorskie

Other projects carried out by the institution 

Principal investigator (from the host institution):

prof. Jarosław Burczyk 

Number of co-investigators in the project: 7

Call: MAESTRO 2 - announced on 2011-12-15

Amount awarded: 2 857 500 PLN

Project start date (Y-m-d): 2012-08-28

Project end date (Y-m-d): 2019-02-27

Project duration:: 78 months (the same as in the proposal)

Project status: Project settled

Information in the final report

  • Publication in academic press/journals (12)
  1. A Chromosome-Level Genome Assembly of the European Beech (Fagus sylvatica) Reveals Anomalies for Organelle DNA Integration, Repeat Content and Distribution of SNPs
    Authors:
    Mishra, B., Ulaszewski, B., Meger, J., Aury, J.-M., Bodénès, C., Lesur-Kupin, I., Pfenninger, M., Da Silva, C., Gupta, D.K., Guichoux, E., Heer, K., Lalanne, C., Labadie, K., Opgenoorth, L., Ploch, S., Le Provost, G., Salse, J., Scotti, I., Wötzel, S., Plomion, C., Burczyk, J. & Thines, M.
    Academic press:
    Frontiers in Genetics (rok: 2022, tom: 12: 691058, strony: 45309), Wydawca: Frontiers Media S.A.
    Status:
    Published
    DOI:
    10.3389/fgene.2021.691058 - link to the publication
  2. A Circular Chloroplast Genome of Fagus sylvatica Reveals High Conservation between Two Individuals from Germany and One Individual from Poland and an Alternate Direction of the Small Single-Copy Region
    Authors:
    Mishra B, Ulaszewski B, Ploch S, Burczyk J, Thines M
    Academic press:
    Forests (rok: 2021, tom: 21, strony: 45298), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/f12020180 - link to the publication
  3. A novel synthesis of two decades of microsatellite studies on European beech reveals decreasing genetic diversity from glacial refugia
    Authors:
    Stefanini C, Csilléry K, Ulaszewski B, Burczyk J, Schaepman ME, Schuman MC
    Academic press:
    Tree Genetics & Genomes (rok: 2023, tom: 0,79375, strony: 45309), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s11295-022-01577-4 - link to the publication
  4. A reference genome of the European beech (Fagus sylvatica L.)
    Authors:
    Bagdevi Mishra, Deepak K Gupta, Markus Pfenninger, Thomas Hickler, Ewald Langer, Bora Nam, Juraj Paule, Rahul Sharma, Bartosz Ulaszewski, Joanna Warmbier, Jaroslaw Burczyk, Marco Thines
    Academic press:
    GigaScience (rok: 2018, tom: 0,295833333333333, strony: 45299), Wydawca: Oxford University Press
    Status:
    Published
    DOI:
    10.1093/gigascience/giy063 - link to the publication
  5. Comparative Analysis of SNP Discovery and Genotyping in Fagus sylvatica L. and Quercus robur L. Using RADseq, GBS, and ddRAD Methods.
    Authors:
    Ulaszewski, B., Meger, J., & Burczyk, J.
    Academic press:
    Forests (rok: 2021, tom: 12(2), strony: 45308), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/f12020222 - link to the publication
  6. GENETIC INSIGHTS INTO ECOLOGICAL SUCCESSION FROM OAK- (QUERCUS ROBUR L.) TO BEECH- (FAGUS SYLVATICA L.) DOMINATED FOREST STANDS
    Authors:
    Elżbieta Sandurska, Bartosz Ulaszewski and Jarosław Burczyk
    Academic press:
    Acta Biologica Cracoviensia Series Botanica (rok: 2017, tom: 59/1, strony: 23-33), Wydawca: Polish Academy of Sciences and Jagiellonian University; De Gruyter
    Status:
    Published
    DOI:
    10.1515/abcsb-2017-0002 - link to the publication
  7. Using reduced representation libraries sequencing methods to identify cpDNA polymorphisms in European beech (Fagus sylvatica L)
    Authors:
    Joanna Meger, Bartosz Ulaszewski, Giovanni G Vendramin, Jaroslaw Burczyk
    Academic press:
    Tree Genetics and Genomes (rok: 2019, tom: 15, strony: 45298), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1007/s11295-018-1313-6 - link to the publication
  8. A comparison of three circular mitochondrial genomes of Fagus sylvatica from Germany and Poland reveals low variation and complete identity of the gene space
    Authors:
    Mishra, B., Ulaszewski, B., Meger, J., Ploch, S., Burczyk, J. & Thines, M.
    Academic press:
    Forests (rok: 2021, tom: 12/571, strony: 45299), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/f12050571 - link to the publication
  9. Genetic diversity and differentiation of coexisting populations of Quercus robur L. and Q. petraea (Matt) Liebl.
    Authors:
    Elżbieta Sandurska, Bartosz Ulaszewski and Jarosław Burczyk
    Academic press:
    Acta Biologica Cracoviensia Series Botanica (rok: 2019, tom: 61/1, strony: 17-28), Wydawca: Polish Academy of Sciences and Jagiellonian University; De Gruyter
    Status:
    Published
    DOI:
    10.24425/118060 - link to the publication
  10. Genomic signatures of natural selection at phenology-related genes in a widely distributed tree species Fagus sylvatica L.
    Authors:
    Meger, J., Ulaszewski, B., Burczyk, J.
    Academic press:
    BMC Genomics (rok: 2021, tom: 1,32152777777778, strony: 45311), Wydawca: Springer
    Status:
    Published
    DOI:
    10.1186/s12864-021-07907-5 - link to the publication
  11. Complete chloroplast genomes of Fagus sylvatica L. reveal sequence conservation in the inverted repeat and the presence of allelic variation in NUPTs
    Authors:
    Ulaszewski, B., Meger, J., Mishra, B., Thines, M. & Burczyk, J.
    Academic press:
    Genes (rok: 2021, tom: 1,44236111111111, strony: 45302), Wydawca: MDPI
    Status:
    Published
    DOI:
    10.3390/ - link to the publication
  12. NMpi-improved re-implementation of NM+, a software for estimating gene dispersal and mating patterns
    Authors:
    Chybicki I.J.
    Academic press:
    Molecular Ecology Resources (rok: 2018, tom: 18, strony: 159-168), Wydawca: John Wiley & Sons Ltd
    Status:
    Published
    DOI:
    10.1111/1755-0998.12710 - link to the publication

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