Projects funded by the NCN

Information on the principal investigator and host institution

Information of the project and the call

Keywords

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Coarse-grained molecular dynamics of RNA thermometers at elevated temperatures

2011/03/N/NZ2/02482

Keywords:

RNA thermometers coarse-grained force field evolutionary algorithm molecular dynamics

Descriptors:

  • NZ2_10: Biological systems analysis, modelling and simulation
  • NZ1_3: Biophysics
  • ST6_8: Computer graphics, image processing, computer vision, multimedia, computer games

Panel:

NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology

Host institution :

Uniwersytet Warszawski, Centrum Nowych Technologii Uniwersytetu Warszawskiego

woj. mazowieckie

Other projects carried out by the institution 

Principal investigator (from the host institution):

Filip Leonarski 

Number of co-investigators in the project: 3

Call: PRELUDIUM 2 - announced on 2011-09-15

Amount awarded: 250 000 PLN

Project start date (Y-m-d): 2012-09-18

Project end date (Y-m-d): 2014-09-17

Project duration:: 24 months (the same as in the proposal)

Project status: Project settled

Equipment purchased [PL]

  1. Licencja Adobe Acrobat Pro PL.
  2. Licencja Adobe Illustrator CS6.
  3. Licencja MS Office Pro 2010.
  4. Moduł USB do zbierania danych z czujnikiem wilgotności.
  5. Laptop Inspiron 5523 (5 600 PLN)
  6. Licencja Symantec Endpoint Protection.

Information in the final report

  • Publication in academic press/journals (2)
  • Book publications / chapters in book publications (1)
  1. Evolutionary Algorithm in the Optimization of a Coarse-Grained Force Field
    Authors:
    Filip Leonarski, Fabio Trovato, Valentina Tozzini, Andrzej Leś, Joanna Trylska
    Academic press:
    Journal of Chemical Theory and Computation (rok: 2013, tom: 9, strony: 4874-4889), Wydawca: American Chemical Society
    Status:
    Published
    DOI:
    10.1021/ct4005036 - link to the publication
  2. RedMDStream: Parameterization and Simulation Toolbox for Coarse-Grained Molecular Dynamics Models
    Authors:
    Filip Leonarski, Joanna Trylska
    Academic press:
    Biophysical Journal (rok: 2015, tom: 108, strony: 1843-1847), Wydawca: Cell Press
    Status:
    Published
    DOI:
    10.1016/j.bpj.2015.03.023 - link to the publication
  1. Modeling Nucleic Acids at the Residue-Level Resolution
    Authors:
    Filip Leonarski, Joanna Trylska
    Book:
    Computational Methods to Study the Structure and Dynamics of Biomolecules and Biomolecular Processes From Bioinformatics to Molecular Quantum Mechanics (rok: 2013, tom: 1, strony: 109-149), Wydawca: Springer
    Status:
    Published
    DOI:
    link to the publication

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