Projects funded by the NCN
Investigation of the RNA secondary structure in vivo with employment of high-throughput sequencing techniques
2011/03/D/NZ2/03304
Keywords:
transcriptomics RNA RNA secondary structure high-throughput sequencing siRNA
Descriptors:
- NZ2_1: Molecular genetics
- NZ2_2: Genomics, transcriptomics, epigenomics
- NZ2_7: Bioinformatics
Panel:
NZ2 - Genetics, genomics: molecular genetics, genomics, proteomics, bioinformatics, systems biology, genetic epidemiology
Host institution :
Uniwersytet im. Adama Mickiewicza, Wydział Biologii UAM
woj. wielkopolskie
Principal investigator (from the host institution):
Number of co-investigators in the project: 5
Call: SONATA 2 - announced on 2011-09-15
Amount awarded: 994 324 PLN
Project start date (Y-m-d): 2012-09-17
Project end date (Y-m-d): 2018-03-16
Project duration:: 66 months (the same as in the proposal)
Project status: Project settled
Information in the final report
- Publication in academic press/journals (3)
- AGouTI - flexible Annotation of Genomic and Transcriptomic IntervalsAuthors:Jan G. Kosiński, Marek ŻywickiAcademic press:PLOS Computational Biology (rok: 2023, tom: 19, strony: e1011527), Wydawca: Public Library of ScienceStatus:PublishedDOI:10.1371/journal.pcbi.1011527 - link to the publication
- The Evaluation of SHAPE-MaP RNA Structure Probing Protocols Reveals a Novel Role of Mn2+ in the Detection of 2′-OH AdductsAuthors:Kamilla Grzywacz, Agnieszka Chełkowska-Pauszek, Marianna Plucinska-Jankowska, Marek ŻywickiAcademic press:International Journal of Molecular Sciences (rok: 2023, tom: 24, strony: 7890), Wydawca: MDPIStatus:PublishedDOI:10.3390/ijms24097890 - link to the publication
- Suitability of high-throughput DMS-probing data for constraining the secondary structure prediction of small RNAsAuthors:Marianna Plucinska, Kamilla Bąkowska-Żywicka, Marek ŻywickiAcademic press:BioTechnologia (rok: 2016, tom: 97(3), strony: 161-167), Wydawca: Termedia Publishing HouseStatus:PublishedDOI:10.5114/bta.2016.62353 - link to the publication